Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j15r
(758 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M31899-1|AAA52396.1| 782|Homo sapiens ERCC3 protein. 295 8e-80
BC008820-1|AAH08820.1| 782|Homo sapiens excision repair cross-c... 295 8e-80
AY163769-1|AAN46739.1| 782|Homo sapiens excision repair cross-c... 295 8e-80
AC110926-1|AAY15069.1| 782|Homo sapiens unknown protein. 295 8e-80
AK222465-1|BAD96185.1| 782|Homo sapiens excision repair cross-c... 289 6e-78
BC020226-1|AAH20226.1| 99|Homo sapiens HLA-DOB protein protein. 31 3.4
Z11583-1|CAA77669.1| 2115|Homo sapiens NuMA protein protein. 31 6.0
AB210007-1|BAE06089.1| 2121|Homo sapiens NUMA1 variant protein p... 31 6.0
>M31899-1|AAA52396.1| 782|Homo sapiens ERCC3 protein.
Length = 782
Score = 295 bits (725), Expect = 8e-80
Identities = 136/176 (77%), Positives = 160/176 (90%)
Frame = -3
Query: 756 FRACQYLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNP 577
FRACQ+L+++HERR DK IVF+DNVFAL+ YA+++NKPYIYGPTSQ ER+QILQNFK NP
Sbjct: 541 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP 600
Query: 576 KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFY 397
K+NTIF+SKV DTSFDLPEANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY
Sbjct: 601 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY 660
Query: 396 TLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTLLSQ 229
+LVSQDT EMAYS KRQRFLV+QGYS+KVIT+L GM++E D+ + T+EEQ LL +
Sbjct: 661 SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQK 715
>BC008820-1|AAH08820.1| 782|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 782
Score = 295 bits (725), Expect = 8e-80
Identities = 136/176 (77%), Positives = 160/176 (90%)
Frame = -3
Query: 756 FRACQYLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNP 577
FRACQ+L+++HERR DK IVF+DNVFAL+ YA+++NKPYIYGPTSQ ER+QILQNFK NP
Sbjct: 541 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP 600
Query: 576 KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFY 397
K+NTIF+SKV DTSFDLPEANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY
Sbjct: 601 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY 660
Query: 396 TLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTLLSQ 229
+LVSQDT EMAYS KRQRFLV+QGYS+KVIT+L GM++E D+ + T+EEQ LL +
Sbjct: 661 SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQK 715
>AY163769-1|AAN46739.1| 782|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 782
Score = 295 bits (725), Expect = 8e-80
Identities = 136/176 (77%), Positives = 160/176 (90%)
Frame = -3
Query: 756 FRACQYLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNP 577
FRACQ+L+++HERR DK IVF+DNVFAL+ YA+++NKPYIYGPTSQ ER+QILQNFK NP
Sbjct: 541 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP 600
Query: 576 KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFY 397
K+NTIF+SKV DTSFDLPEANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY
Sbjct: 601 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY 660
Query: 396 TLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTLLSQ 229
+LVSQDT EMAYS KRQRFLV+QGYS+KVIT+L GM++E D+ + T+EEQ LL +
Sbjct: 661 SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQK 715
>AC110926-1|AAY15069.1| 782|Homo sapiens unknown protein.
Length = 782
Score = 295 bits (725), Expect = 8e-80
Identities = 136/176 (77%), Positives = 160/176 (90%)
Frame = -3
Query: 756 FRACQYLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNP 577
FRACQ+L+++HERR DK IVF+DNVFAL+ YA+++NKPYIYGPTSQ ER+QILQNFK NP
Sbjct: 541 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP 600
Query: 576 KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFY 397
K+NTIF+SKV DTSFDLPEANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY
Sbjct: 601 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY 660
Query: 396 TLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTLLSQ 229
+LVSQDT EMAYS KRQRFLV+QGYS+KVIT+L GM++E D+ + T+EEQ LL +
Sbjct: 661 SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQK 715
>AK222465-1|BAD96185.1| 782|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 782
Score = 289 bits (710), Expect = 6e-78
Identities = 134/176 (76%), Positives = 158/176 (89%)
Frame = -3
Query: 756 FRACQYLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNP 577
FRACQ+L+++HERR DK IVF+DNVFAL+ YA+++NK YIYGPTSQ ER+QILQNFK NP
Sbjct: 541 FRACQFLIKFHERRNDKIIVFADNVFALKEYAIRLNKSYIYGPTSQGERMQILQNFKHNP 600
Query: 576 KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFY 397
K+NTIF+SKV DTSFDLPEANVLIQISSHGGSRRQEAQRLGR+LRAKKG +AEEYNAFFY
Sbjct: 601 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFY 660
Query: 396 TLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTLLSQ 229
+LVSQDT EMAYS KRQ FLV+QGYS+KVIT+L GM++E D+ + T+EEQ LL +
Sbjct: 661 SLVSQDTQEMAYSTKRQGFLVDQGYSFKVITKLAGMEEE-DLAFSTKEEQQQLLQK 715
>BC020226-1|AAH20226.1| 99|Homo sapiens HLA-DOB protein protein.
Length = 99
Score = 31.5 bits (68), Expect = 3.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 491 TEAPGDKRHRD*VVF*EQRKALWPKNIMPFSTL*YHKTPWRWLTVEKD 348
T++PG R +VF + W +MPF H+ W+WL V K+
Sbjct: 27 TDSPGKNRA---IVFFQCVCKNWHGGVMPFFVSPGHRPDWKWLLVSKN 71
>Z11583-1|CAA77669.1| 2115|Homo sapiens NuMA protein protein.
Length = 2115
Score = 30.7 bits (66), Expect = 6.0
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Frame = -3
Query: 627 TSQSERIQILQNFKFNPKVNTIFVSKVADTS-FDLPEANVLIQISSHGGSRRQEAQRLGR 451
T+Q E++++ Q + +V + K+AD+ + L + + GG +QEAQRL
Sbjct: 1534 TAQVEQLEVFQREQ-TKQVEELS-KKLADSDQASKVQQQKLKAVQAQGGESQQEAQRLQA 1591
Query: 450 ILRAKKGALAEEYNAFFYTLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDM 271
L + L+++ A + + + + Y K+Q+ NQ + + L+ + +E
Sbjct: 1592 QLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQ---NQELQ-EQLRSLEQLQKENKE 1647
Query: 270 LYGTREEQGTLLSQ 229
L E G L Q
Sbjct: 1648 LRAEAERLGHELQQ 1661
>AB210007-1|BAE06089.1| 2121|Homo sapiens NUMA1 variant protein
protein.
Length = 2121
Score = 30.7 bits (66), Expect = 6.0
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Frame = -3
Query: 627 TSQSERIQILQNFKFNPKVNTIFVSKVADTS-FDLPEANVLIQISSHGGSRRQEAQRLGR 451
T+Q E++++ Q + +V + K+AD+ + L + + GG +QEAQRL
Sbjct: 1540 TAQVEQLEVFQREQ-TKQVEELS-KKLADSDQASKVQQQKLKAVQAQGGESQQEAQRLQA 1597
Query: 450 ILRAKKGALAEEYNAFFYTLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDM 271
L + L+++ A + + + + Y K+Q+ NQ + + L+ + +E
Sbjct: 1598 QLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQ---NQELQ-EQLRSLEQLQKENKE 1653
Query: 270 LYGTREEQGTLLSQ 229
L E G L Q
Sbjct: 1654 LRAEAERLGHELQQ 1667
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,210,255
Number of Sequences: 237096
Number of extensions: 1649666
Number of successful extensions: 3681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3681
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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