Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j15r
         (758 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X68309-2|CAA48386.1|  802|Drosophila melanogaster ERCC3 protein.      332   4e-91
S50517-1|AAA12421.1|  802|Drosophila melanogaster ERCC3Dm protein.    332   4e-91
BT025199-1|ABF17890.1|  798|Drosophila melanogaster FI01118p pro...   332   4e-91
AY051975-1|AAK93399.1|  798|Drosophila melanogaster LD44022p pro...   332   4e-91
AE014296-1828|AAF50150.1|  798|Drosophila melanogaster CG8019-PA...   332   4e-91
L02965-1|AAA74931.1|  801|Drosophila melanogaster helicase protein.   321   7e-88

>X68309-2|CAA48386.1|  802|Drosophila melanogaster ERCC3 protein.
          Length = 802

 Score =  332 bits (815), Expect = 4e-91
 Identities = 153/174 (87%), Positives = 169/174 (97%)
 Frame = -3

Query: 756  FRACQYLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNP 577
            FR+CQ+L++YHE+RGDKTIVFSDNVFAL+HYA+KMNKP+IYGPTSQ+ERIQILQNFKFN 
Sbjct: 561  FRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNS 620

Query: 576  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFY 397
            KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA+AEEYNAFFY
Sbjct: 621  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFY 680

Query: 396  TLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTLL 235
            TLVSQDT+EM+YSRKRQRFLVNQGYSYKVIT LKGMD + D++YGT+EEQG LL
Sbjct: 681  TLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLL 734


>S50517-1|AAA12421.1|  802|Drosophila melanogaster ERCC3Dm protein.
          Length = 802

 Score =  332 bits (815), Expect = 4e-91
 Identities = 153/174 (87%), Positives = 169/174 (97%)
 Frame = -3

Query: 756  FRACQYLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNP 577
            FR+CQ+L++YHE+RGDKTIVFSDNVFAL+HYA+KMNKP+IYGPTSQ+ERIQILQNFKFN 
Sbjct: 561  FRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNS 620

Query: 576  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFY 397
            KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA+AEEYNAFFY
Sbjct: 621  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFY 680

Query: 396  TLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTLL 235
            TLVSQDT+EM+YSRKRQRFLVNQGYSYKVIT LKGMD + D++YGT+EEQG LL
Sbjct: 681  TLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLL 734


>BT025199-1|ABF17890.1|  798|Drosophila melanogaster FI01118p protein.
          Length = 798

 Score =  332 bits (815), Expect = 4e-91
 Identities = 153/174 (87%), Positives = 169/174 (97%)
 Frame = -3

Query: 756  FRACQYLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNP 577
            FR+CQ+L++YHE+RGDKTIVFSDNVFAL+HYA+KMNKP+IYGPTSQ+ERIQILQNFKFN 
Sbjct: 557  FRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNS 616

Query: 576  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFY 397
            KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA+AEEYNAFFY
Sbjct: 617  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFY 676

Query: 396  TLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTLL 235
            TLVSQDT+EM+YSRKRQRFLVNQGYSYKVIT LKGMD + D++YGT+EEQG LL
Sbjct: 677  TLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLL 730


>AY051975-1|AAK93399.1|  798|Drosophila melanogaster LD44022p protein.
          Length = 798

 Score =  332 bits (815), Expect = 4e-91
 Identities = 153/174 (87%), Positives = 169/174 (97%)
 Frame = -3

Query: 756  FRACQYLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNP 577
            FR+CQ+L++YHE+RGDKTIVFSDNVFAL+HYA+KMNKP+IYGPTSQ+ERIQILQNFKFN 
Sbjct: 557  FRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNS 616

Query: 576  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFY 397
            KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA+AEEYNAFFY
Sbjct: 617  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFY 676

Query: 396  TLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTLL 235
            TLVSQDT+EM+YSRKRQRFLVNQGYSYKVIT LKGMD + D++YGT+EEQG LL
Sbjct: 677  TLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLL 730


>AE014296-1828|AAF50150.1|  798|Drosophila melanogaster CG8019-PA
            protein.
          Length = 798

 Score =  332 bits (815), Expect = 4e-91
 Identities = 153/174 (87%), Positives = 169/174 (97%)
 Frame = -3

Query: 756  FRACQYLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNP 577
            FR+CQ+L++YHE+RGDKTIVFSDNVFAL+HYA+KMNKP+IYGPTSQ+ERIQILQNFKFN 
Sbjct: 557  FRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNS 616

Query: 576  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFY 397
            KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGA+AEEYNAFFY
Sbjct: 617  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGAIAEEYNAFFY 676

Query: 396  TLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTLL 235
            TLVSQDT+EM+YSRKRQRFLVNQGYSYKVIT LKGMD + D++YGT+EEQG LL
Sbjct: 677  TLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSDLMYGTQEEQGQLL 730


>L02965-1|AAA74931.1|  801|Drosophila melanogaster helicase protein.
          Length = 801

 Score =  321 bits (788), Expect = 7e-88
 Identities = 149/174 (85%), Positives = 165/174 (94%)
 Frame = -3

Query: 756  FRACQYLVRYHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNP 577
            FR+CQ+L++YHE+RGDKTIVFSDNVFAL+HYA+KMNKP+IYGPTSQ+ERIQILQNFKFN 
Sbjct: 560  FRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNS 619

Query: 576  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKGALAEEYNAFFY 397
            KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRL RILRAKKGA+AEEYNAFFY
Sbjct: 620  KVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLVRILRAKKGAIAEEYNAFFY 679

Query: 396  TLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEPDMLYGTREEQGTLL 235
            TLVSQDT+EM+YSRKR RFLVNQG  YKVIT LKGMD + D++YGT+EEQG LL
Sbjct: 680  TLVSQDTMEMSYSRKRHRFLVNQGICYKVITHLKGMDTDSDLMYGTQEEQGQLL 733


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,927,962
Number of Sequences: 53049
Number of extensions: 504336
Number of successful extensions: 1604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3478915869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)