Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j15r
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   7.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   7.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 601 PPEFQVQP*SEYDIRE*SRRHQLRSARSERAYT 503
           P E++V+P +  +  E  R+ ++R A   +A+T
Sbjct: 582 PTEWKVRPSTVEEREEFRRQERMRYAAPHKAFT 614


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 16/57 (28%), Positives = 22/57 (38%)
 Frame = -3

Query: 729 YHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNPKVNTIF 559
           Y +     T + +DNVFA           Y     S  E+I  L+ F   PK   +F
Sbjct: 474 YFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLKAFNNVPKKLNMF 530


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 16/57 (28%), Positives = 22/57 (38%)
 Frame = -3

Query: 729 YHERRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQSERIQILQNFKFNPKVNTIF 559
           Y +     T + +DNVFA           Y     S  E+I  L+ F   PK   +F
Sbjct: 474 YFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLKAFNNVPKKLNMF 530


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 681 FALRHYAVKMNKPYI 637
           FA   YA+KMN+ YI
Sbjct: 536 FAQNLYAMKMNETYI 550


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 661 GVVPEREHVVGEHDGLVAAPL 723
           G+ P ++    +H G+V +PL
Sbjct: 220 GMHPRQQQQAQQHQGVVTSPL 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,369
Number of Sequences: 438
Number of extensions: 3291
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)