Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j15f
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    80   3e-16
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    27   3.3  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   3.3  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    26   5.8  

>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = +2

Query: 476 FGAKDYRSQMPLKPDNASRPLWVAP-NGHIFLEAFSPVYKHAHDFLIAIAEPVCRPPHXX 652
           FG  D+ + + LK D+ +RPLW+ P +G I LEAFSP+ + A DFL+ I+EPV RP    
Sbjct: 71  FGQNDFSNLLGLKLDHTARPLWINPIDGRIILEAFSPLAEQAIDFLVTISEPVSRPAFIH 130

Query: 653 EYXLTAYSLY 682
           EY +TAYSLY
Sbjct: 131 EYRITAYSLY 140


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 417 GSLLLPCKMLRRMIKYLKTNLVLKI--IEVKCRLNQTT 524
           G  L+ C M+ + IKYL+ NL+L I    V  ++N+ T
Sbjct: 264 GGTLMQCTMIPK-IKYLEANLILAIQKAAVVSKINRIT 300


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 270 FSRQSQLTVFVCTIILFYNQLYVQFFCECLTHYVFVV 160
           FS++S L V V  +I  +N ++  F      HY+F V
Sbjct: 293 FSKKSFLIVSVLLLIAHFNTIFHPFILADNRHYLFYV 329


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 646 VWGSANWFS-YSNQKIMSMFVNWR 578
           +WG A WFS Y  + ++S    +R
Sbjct: 114 IWGQAGWFSVYHQELVISAITRYR 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,074
Number of Sequences: 5004
Number of extensions: 49839
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)