Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j15f
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0338 + 28538951-28538966,28539073-28539183,28539311-285394... 94 1e-19
05_06_0139 + 25952523-25952610,25952736-25953288,25953417-259539... 33 0.28
01_06_0322 + 28472680-28473053,28474434-28474470,28474578-284748... 29 3.4
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367... 29 4.5
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176... 28 6.0
02_04_0432 + 22885880-22886168,22886755-22886801,22888496-22888939 28 6.0
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 28 7.9
08_02_0009 + 11216532-11218687,11220727-11225998 28 7.9
08_02_0003 + 11180421-11180757,11180773-11185715 28 7.9
08_02_0002 + 11173365-11173512,11173528-11178470 28 7.9
05_06_0134 + 25912474-25912561,25912678-25913230,25914063-259145... 28 7.9
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 28 7.9
>01_06_0338 +
28538951-28538966,28539073-28539183,28539311-28539479,
28540841-28541063,28541148-28541204,28541718-28541861,
28541939-28542019,28543026-28543113,28543579-28543943,
28544011-28544086,28544174-28544367,28544846-28545009,
28545080-28545152,28545237-28545350,28545839-28545919,
28546043-28546102,28546180-28546289,28546325-28546501,
28546599-28546683
Length = 795
Score = 93.9 bits (223), Expect = 1e-19
Identities = 43/81 (53%), Positives = 58/81 (71%)
Frame = +2
Query: 440 DAEKNDQVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFSPVYKHAHDFLIAI 619
D + + + + E +D+ +++ LKPD+A+RPLW +G IFLE FSP+YK A+DFLIAI
Sbjct: 35 DVDDDVRDADREVKKRDF-TKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAI 93
Query: 620 AEPVCRPPHXXEYXLTAYSLY 682
AEPVCRP EY LT +SLY
Sbjct: 94 AEPVCRPESMHEYNLTPHSLY 114
>05_06_0139 +
25952523-25952610,25952736-25953288,25953417-25953913,
25953942-25953955
Length = 383
Score = 32.7 bits (71), Expect = 0.28
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 440 DAEKNDQVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGH-IFLEAFSPVYKHAHDFLIA 616
DA + P + A Y +++ L P NA R ++ NG ++ E+++P+Y +A LI
Sbjct: 275 DAYTQPKDPTPGYIANFYFTEVQLLPSNALRQFYINLNGRLVYNESYTPLYLYAD--LIY 332
Query: 617 IAEPVCRPP 643
+P R P
Sbjct: 333 EKKPFLRYP 341
>01_06_0322 +
28472680-28473053,28474434-28474470,28474578-28474814,
28474891-28474938,28475263-28475661
Length = 364
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 533 PLWVAPNGHIFLEAFSPVYKHAHDFLIAIAEPVCRP 640
PLW+ GH LE + KH F+ ++ + +P
Sbjct: 257 PLWLTGGGHCNLELYPDYIKHLKKFVSSLGKKSSKP 292
>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
3675973-3676042,3676157-3676224
Length = 1337
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = +3
Query: 384 IL*MMIMQKTMGSLLLPCKMLRRMIKYLKTNLVLKIIEVKCRLNQTTPVVLYGWHPMDIF 563
+L MM+ + S+ ++RRM + + + L++ E+ +++T ++LY +F
Sbjct: 904 VLCMMLKMQNSLSISSYRFLVRRMCEQSRISSALRLKELIQDRDKSTELILYNILIFYLF 963
Query: 564 SWKHFLQFTNML 599
+H LQ N+L
Sbjct: 964 RRRHILQVHNLL 975
>06_03_0843 +
25315089-25315417,25317274-25317310,25317439-25317675,
25317745-25317792,25318144-25318577,25318675-25318759
Length = 389
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 533 PLWVAPNGHIFLEAFSPVYKHAHDFLIAI 619
PLWV H LE + KH F++AI
Sbjct: 242 PLWVKGGNHCNLELYPEYIKHLKKFVMAI 270
>02_04_0432 + 22885880-22886168,22886755-22886801,22888496-22888939
Length = 259
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 267 KNKSILPKWGPRRNSRDMTQKEEVIDQVKR 356
K +S LP+W PR RD+T +V++ +R
Sbjct: 65 KRRSPLPEWYPRSPLRDITSVVKVMNHSRR 94
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 148 LRNFNNKYIVRQTFTEKLNI*LIIK 222
+ NF NKYIVR F E L I + +K
Sbjct: 768 ITNFGNKYIVRLPFKEILGIRIPVK 792
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 148 LRNFNNKYIVRQTFTEKLNI*LIIK 222
+ NF NKYIVR F E L I + +K
Sbjct: 1733 ITNFGNKYIVRLPFKEILGIRIPVK 1757
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 148 LRNFNNKYIVRQTFTEKLNI*LIIK 222
+ NF NKYIVR F E L I + +K
Sbjct: 1017 ITNFGNKYIVRLPFKEILGIRIPVK 1041
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 148 LRNFNNKYIVRQTFTEKLNI*LIIK 222
+ NF NKYIVR F E L I + +K
Sbjct: 954 ITNFGNKYIVRLPFKEILGIRIPVK 978
>05_06_0134 +
25912474-25912561,25912678-25913230,25914063-25914556,
25914804-25914942,25915511-25915582,25915671-25915742,
25917202-25917282,25917385-25917545,25917626-25917894,
25917996-25918122,25918193-25918261,25918366-25918558,
25918605-25919046
Length = 919
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 497 SQMPLKPDNASRPLWVAPNGHIFLEAFSPVYKHA 598
S++ P+NA+R ++ NG +F + F+P + +A
Sbjct: 294 SELENLPNNATRQFYININGILFDDGFTPSFLYA 327
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 533 PLWVAPNGHIFLEAFSPVYKHAHDFLIAI 619
PLWV GH LE + +H F+ A+
Sbjct: 236 PLWVKGGGHCNLETYPEYIRHLRKFINAM 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,471,802
Number of Sequences: 37544
Number of extensions: 274899
Number of successful extensions: 531
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -