Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j15f
         (683 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M31899-1|AAA52396.1|  782|Homo sapiens ERCC3 protein.                 136   9e-32
BC008820-1|AAH08820.1|  782|Homo sapiens excision repair cross-c...   136   9e-32
AY163769-1|AAN46739.1|  782|Homo sapiens excision repair cross-c...   136   9e-32
AK222465-1|BAD96185.1|  782|Homo sapiens excision repair cross-c...   136   9e-32
AC110926-1|AAY15069.1|  782|Homo sapiens unknown protein.             136   9e-32
BC071702-1|AAH71702.1|  476|Homo sapiens DBC1 protein protein.         32   2.2  
BC065196-1|AAH65196.1|  761|Homo sapiens deleted in bladder canc...    32   2.2  
AL353773-1|CAI16000.1|  761|Homo sapiens deleted in bladder canc...    32   2.2  
AL138894-1|CAH72027.1|  761|Homo sapiens deleted in bladder canc...    32   2.2  
AF027734-1|AAC39691.1|  761|Homo sapiens IB3089A protein.              32   2.2  

>M31899-1|AAA52396.1|  782|Homo sapiens ERCC3 protein.
          Length = 782

 Score =  136 bits (328), Expect = 9e-32
 Identities = 63/94 (67%), Positives = 73/94 (77%)
 Frame = +2

Query: 401 NAENDGVPVAAMQDAEKNDQVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFS 580
           N   + VP AA +  +++     DE+GAKDYR QMPLK D+ SRPLWVAP+GHIFLEAFS
Sbjct: 32  NDPQEAVPSAAGKQVDESG-TKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFS 90

Query: 581 PVYKHAHDFLIAIAEPVCRPPHXXEYXLTAYSLY 682
           PVYK+A DFL+AIAEPVCRP H  EY LTAYSLY
Sbjct: 91  PVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 124


>BC008820-1|AAH08820.1|  782|Homo sapiens excision repair
           cross-complementing rodent repair deficiency,
           complementation g protein.
          Length = 782

 Score =  136 bits (328), Expect = 9e-32
 Identities = 63/94 (67%), Positives = 73/94 (77%)
 Frame = +2

Query: 401 NAENDGVPVAAMQDAEKNDQVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFS 580
           N   + VP AA +  +++     DE+GAKDYR QMPLK D+ SRPLWVAP+GHIFLEAFS
Sbjct: 32  NDPQEAVPSAAGKQVDESG-TKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFS 90

Query: 581 PVYKHAHDFLIAIAEPVCRPPHXXEYXLTAYSLY 682
           PVYK+A DFL+AIAEPVCRP H  EY LTAYSLY
Sbjct: 91  PVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 124


>AY163769-1|AAN46739.1|  782|Homo sapiens excision repair
           cross-complementing rodent repair deficiency,
           complementation g protein.
          Length = 782

 Score =  136 bits (328), Expect = 9e-32
 Identities = 63/94 (67%), Positives = 73/94 (77%)
 Frame = +2

Query: 401 NAENDGVPVAAMQDAEKNDQVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFS 580
           N   + VP AA +  +++     DE+GAKDYR QMPLK D+ SRPLWVAP+GHIFLEAFS
Sbjct: 32  NDPQEAVPSAAGKQVDESG-TKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFS 90

Query: 581 PVYKHAHDFLIAIAEPVCRPPHXXEYXLTAYSLY 682
           PVYK+A DFL+AIAEPVCRP H  EY LTAYSLY
Sbjct: 91  PVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 124


>AK222465-1|BAD96185.1|  782|Homo sapiens excision repair
           cross-complementing rodent repair deficiency,
           complementation g protein.
          Length = 782

 Score =  136 bits (328), Expect = 9e-32
 Identities = 63/94 (67%), Positives = 73/94 (77%)
 Frame = +2

Query: 401 NAENDGVPVAAMQDAEKNDQVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFS 580
           N   + VP AA +  +++     DE+GAKDYR QMPLK D+ SRPLWVAP+GHIFLEAFS
Sbjct: 32  NDPQEAVPSAAGKQVDESG-TKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFS 90

Query: 581 PVYKHAHDFLIAIAEPVCRPPHXXEYXLTAYSLY 682
           PVYK+A DFL+AIAEPVCRP H  EY LTAYSLY
Sbjct: 91  PVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 124


>AC110926-1|AAY15069.1|  782|Homo sapiens unknown protein.
          Length = 782

 Score =  136 bits (328), Expect = 9e-32
 Identities = 63/94 (67%), Positives = 73/94 (77%)
 Frame = +2

Query: 401 NAENDGVPVAAMQDAEKNDQVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFS 580
           N   + VP AA +  +++     DE+GAKDYR QMPLK D+ SRPLWVAP+GHIFLEAFS
Sbjct: 32  NDPQEAVPSAAGKQVDESG-TKVDEYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFS 90

Query: 581 PVYKHAHDFLIAIAEPVCRPPHXXEYXLTAYSLY 682
           PVYK+A DFL+AIAEPVCRP H  EY LTAYSLY
Sbjct: 91  PVYKYAQDFLVAIAEPVCRPTHVHEYKLTAYSLY 124


>BC071702-1|AAH71702.1|  476|Homo sapiens DBC1 protein protein.
          Length = 476

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +3

Query: 462 YLKTNLVLKIIEVKCRLNQTTPVVLYGWHPMDIFS--WKHFLQFTNMLMI 605
           Y  ++++L +++++ R+N+  P V  G   +D+FS   KH L+ TN  +I
Sbjct: 402 YSSSSVMLLLLDIRDRINRLAPPVAPGKPQLDLFSCMLKHRLKLTNSEII 451


>BC065196-1|AAH65196.1|  761|Homo sapiens deleted in bladder cancer
           1 protein.
          Length = 761

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +3

Query: 462 YLKTNLVLKIIEVKCRLNQTTPVVLYGWHPMDIFS--WKHFLQFTNMLMI 605
           Y  ++++L +++++ R+N+  P V  G   +D+FS   KH L+ TN  +I
Sbjct: 687 YSSSSVMLLLLDIRDRINRLAPPVAPGKPQLDLFSCMLKHRLKLTNSEII 736


>AL353773-1|CAI16000.1|  761|Homo sapiens deleted in bladder cancer
           1 protein.
          Length = 761

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +3

Query: 462 YLKTNLVLKIIEVKCRLNQTTPVVLYGWHPMDIFS--WKHFLQFTNMLMI 605
           Y  ++++L +++++ R+N+  P V  G   +D+FS   KH L+ TN  +I
Sbjct: 687 YSSSSVMLLLLDIRDRINRLAPPVAPGKPQLDLFSCMLKHRLKLTNSEII 736


>AL138894-1|CAH72027.1|  761|Homo sapiens deleted in bladder cancer
           1 protein.
          Length = 761

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +3

Query: 462 YLKTNLVLKIIEVKCRLNQTTPVVLYGWHPMDIFS--WKHFLQFTNMLMI 605
           Y  ++++L +++++ R+N+  P V  G   +D+FS   KH L+ TN  +I
Sbjct: 687 YSSSSVMLLLLDIRDRINRLAPPVAPGKPQLDLFSCMLKHRLKLTNSEII 736


>AF027734-1|AAC39691.1|  761|Homo sapiens IB3089A protein.
          Length = 761

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +3

Query: 462 YLKTNLVLKIIEVKCRLNQTTPVVLYGWHPMDIFS--WKHFLQFTNMLMI 605
           Y  ++++L +++++ R+N+  P V  G   +D+FS   KH L+ TN  +I
Sbjct: 687 YSSSSVMLLLLDIRDRINRLAPPVAPGKPQLDLFSCMLKHRLKLTNSEII 736


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,040,241
Number of Sequences: 237096
Number of extensions: 1584352
Number of successful extensions: 2869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2869
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)