Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j15f
(683 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X68309-2|CAA48386.1| 802|Drosophila melanogaster ERCC3 protein. 155 5e-38
S50517-1|AAA12421.1| 802|Drosophila melanogaster ERCC3Dm protein. 155 5e-38
L02965-1|AAA74931.1| 801|Drosophila melanogaster helicase protein. 155 5e-38
BT025199-1|ABF17890.1| 798|Drosophila melanogaster FI01118p pro... 155 5e-38
AY051975-1|AAK93399.1| 798|Drosophila melanogaster LD44022p pro... 155 5e-38
AE014296-1828|AAF50150.1| 798|Drosophila melanogaster CG8019-PA... 155 5e-38
X68309-1|CAA48385.1| 170|Drosophila melanogaster unknown protein. 44 1e-04
AE014296-1377|AAF50483.1| 447|Drosophila melanogaster CG7962-PA... 29 5.9
>X68309-2|CAA48386.1| 802|Drosophila melanogaster ERCC3 protein.
Length = 802
Score = 155 bits (376), Expect = 5e-38
Identities = 68/93 (73%), Positives = 81/93 (87%), Gaps = 1/93 (1%)
Frame = +2
Query: 407 ENDGVPVAAMQDAEKND-QVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFSP 583
E++G+P AA ++AE ND Q+ DE+GAKDYRSQM L+PD+ +RPLWVAPNGH+FLE+FSP
Sbjct: 42 ESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLRPDHGNRPLWVAPNGHVFLESFSP 101
Query: 584 VYKHAHDFLIAIAEPVCRPPHXXEYXLTAYSLY 682
VYKHAHDFLIAI+EPVCRP H EY LTAYSLY
Sbjct: 102 VYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLY 134
>S50517-1|AAA12421.1| 802|Drosophila melanogaster ERCC3Dm protein.
Length = 802
Score = 155 bits (376), Expect = 5e-38
Identities = 68/93 (73%), Positives = 81/93 (87%), Gaps = 1/93 (1%)
Frame = +2
Query: 407 ENDGVPVAAMQDAEKND-QVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFSP 583
E++G+P AA ++AE ND Q+ DE+GAKDYRSQM L+PD+ +RPLWVAPNGH+FLE+FSP
Sbjct: 42 ESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLRPDHGNRPLWVAPNGHVFLESFSP 101
Query: 584 VYKHAHDFLIAIAEPVCRPPHXXEYXLTAYSLY 682
VYKHAHDFLIAI+EPVCRP H EY LTAYSLY
Sbjct: 102 VYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLY 134
>L02965-1|AAA74931.1| 801|Drosophila melanogaster helicase protein.
Length = 801
Score = 155 bits (376), Expect = 5e-38
Identities = 68/93 (73%), Positives = 81/93 (87%), Gaps = 1/93 (1%)
Frame = +2
Query: 407 ENDGVPVAAMQDAEKND-QVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFSP 583
E++G+P AA ++AE ND Q+ DE+GAKDYRSQM L+PD+ +RPLWVAPNGH+FLE+FSP
Sbjct: 42 ESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLRPDHGNRPLWVAPNGHVFLESFSP 101
Query: 584 VYKHAHDFLIAIAEPVCRPPHXXEYXLTAYSLY 682
VYKHAHDFLIAI+EPVCRP H EY LTAYSLY
Sbjct: 102 VYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLY 134
>BT025199-1|ABF17890.1| 798|Drosophila melanogaster FI01118p
protein.
Length = 798
Score = 155 bits (376), Expect = 5e-38
Identities = 68/93 (73%), Positives = 81/93 (87%), Gaps = 1/93 (1%)
Frame = +2
Query: 407 ENDGVPVAAMQDAEKND-QVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFSP 583
E++G+P AA ++AE ND Q+ DE+GAKDYRSQM L+PD+ +RPLWVAPNGH+FLE+FSP
Sbjct: 42 ESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLRPDHGNRPLWVAPNGHVFLESFSP 101
Query: 584 VYKHAHDFLIAIAEPVCRPPHXXEYXLTAYSLY 682
VYKHAHDFLIAI+EPVCRP H EY LTAYSLY
Sbjct: 102 VYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLY 134
>AY051975-1|AAK93399.1| 798|Drosophila melanogaster LD44022p
protein.
Length = 798
Score = 155 bits (376), Expect = 5e-38
Identities = 68/93 (73%), Positives = 81/93 (87%), Gaps = 1/93 (1%)
Frame = +2
Query: 407 ENDGVPVAAMQDAEKND-QVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFSP 583
E++G+P AA ++AE ND Q+ DE+GAKDYRSQM L+PD+ +RPLWVAPNGH+FLE+FSP
Sbjct: 42 ESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLRPDHGNRPLWVAPNGHVFLESFSP 101
Query: 584 VYKHAHDFLIAIAEPVCRPPHXXEYXLTAYSLY 682
VYKHAHDFLIAI+EPVCRP H EY LTAYSLY
Sbjct: 102 VYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLY 134
>AE014296-1828|AAF50150.1| 798|Drosophila melanogaster CG8019-PA
protein.
Length = 798
Score = 155 bits (376), Expect = 5e-38
Identities = 68/93 (73%), Positives = 81/93 (87%), Gaps = 1/93 (1%)
Frame = +2
Query: 407 ENDGVPVAAMQDAEKND-QVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFSP 583
E++G+P AA ++AE ND Q+ DE+GAKDYRSQM L+PD+ +RPLWVAPNGH+FLE+FSP
Sbjct: 42 ESEGIPGAASKNAETNDEQINTDEYGAKDYRSQMQLRPDHGNRPLWVAPNGHVFLESFSP 101
Query: 584 VYKHAHDFLIAIAEPVCRPPHXXEYXLTAYSLY 682
VYKHAHDFLIAI+EPVCRP H EY LTAYSLY
Sbjct: 102 VYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLY 134
>X68309-1|CAA48385.1| 170|Drosophila melanogaster unknown protein.
Length = 170
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 438 KMLRRMI-KYLKTNLVLKIIEVKCRLNQTTPVVLYGWHPMDIFSWKHFLQFTNMLMIFXX 614
+MLR M K ++ + +I +C + T + +G PM SW H +M IF
Sbjct: 73 RMLRPMTSKSIRMSTAPRITGRRCNCVRITEIDHFGLRPMVTSSWNHSRPSISMPTIFLS 132
Query: 615 XXXNQFADPHTYXNTN*PRTV 677
+ ADP+T+ +TN P TV
Sbjct: 133 PFRSPSADPNTFTSTNSPHTV 153
>AE014296-1377|AAF50483.1| 447|Drosophila melanogaster CG7962-PA
protein.
Length = 447
Score = 29.1 bits (62), Expect = 5.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 577 KCFQENMSIGCHP*RTTGVVWFKRHLTSIIFSTKFVF 467
KCFQE +SIG R G+ WF+ + ++ + F
Sbjct: 118 KCFQEIISIGYQVYRIHGLPWFRSLSWYFLLTSNYFF 154
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,778,002
Number of Sequences: 53049
Number of extensions: 503693
Number of successful extensions: 1126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -