Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j15f
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical... 134 4e-32
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p... 31 1.0
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p... 31 1.0
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p... 31 1.0
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle... 31 1.0
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle... 31 1.0
AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical ... 29 4.1
U64601-3|ABC71817.1| 485|Caenorhabditis elegans Temporarily ass... 28 5.4
U64601-2|AAQ82847.1| 592|Caenorhabditis elegans Temporarily ass... 28 5.4
U64601-1|AAB04573.2| 564|Caenorhabditis elegans Temporarily ass... 28 5.4
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 27 9.4
>AL161712-12|CAC70144.1| 789|Caenorhabditis elegans Hypothetical
protein Y66D12A.15 protein.
Length = 789
Score = 134 bits (325), Expect = 4e-32
Identities = 64/94 (68%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
Frame = +2
Query: 407 ENDGVPVAAMQD--AEKNDQVPEDEFGAKDYRSQMPLKPDNASRPLWVAPNGHIFLEAFS 580
E VP AA + E V DEFGAKDYR MPLK D +RPLWVAP+GHIFLE+FS
Sbjct: 31 ETSSVPKAASHNLNGENASSVMTDEFGAKDYRKDMPLKGDFTARPLWVAPDGHIFLESFS 90
Query: 581 PVYKHAHDFLIAIAEPVCRPPHXXEYXLTAYSLY 682
PVYKHA DFLIAI+EPVCRP H EY LTAYSLY
Sbjct: 91 PVYKHARDFLIAISEPVCRPQHIHEYQLTAYSLY 124
>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
protein 73, isoform b protein.
Length = 1638
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 210 VDYKTE**YIQIQLIVIGEKNKSILPKWGPRRNSRDMTQKEEVIDQ 347
VDY +IQ+ + I +KN I +W PRR + K + +Q
Sbjct: 678 VDYSASVAHIQLLISDIEDKNTQISSEWSPRRTLLHIASKFAMFEQ 723
>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
protein 73, isoform f protein.
Length = 2140
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 210 VDYKTE**YIQIQLIVIGEKNKSILPKWGPRRNSRDMTQKEEVIDQ 347
VDY +IQ+ + I +KN I +W PRR + K + +Q
Sbjct: 678 VDYSASVAHIQLLISDIEDKNTQISSEWSPRRTLLHIASKFAMFEQ 723
>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
protein 73, isoform a protein.
Length = 2488
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 210 VDYKTE**YIQIQLIVIGEKNKSILPKWGPRRNSRDMTQKEEVIDQ 347
VDY +IQ+ + I +KN I +W PRR + K + +Q
Sbjct: 678 VDYSASVAHIQLLISDIEDKNTQISSEWSPRRTLLHIASKFAMFEQ 723
>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine
nucleotide exchange factorUNC-73B protein.
Length = 1638
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 210 VDYKTE**YIQIQLIVIGEKNKSILPKWGPRRNSRDMTQKEEVIDQ 347
VDY +IQ+ + I +KN I +W PRR + K + +Q
Sbjct: 678 VDYSASVAHIQLLISDIEDKNTQISSEWSPRRTLLHIASKFAMFEQ 723
>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine
nucleotide exchange factorUNC-73A protein.
Length = 2488
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 210 VDYKTE**YIQIQLIVIGEKNKSILPKWGPRRNSRDMTQKEEVIDQ 347
VDY +IQ+ + I +KN I +W PRR + K + +Q
Sbjct: 678 VDYSASVAHIQLLISDIEDKNTQISSEWSPRRTLLHIASKFAMFEQ 723
>AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical
protein Y105C5B.1 protein.
Length = 311
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +3
Query: 393 MMIMQKTMGSLLLPCKMLRRMIKYLKTNLVLKI 491
MM+++ ++GS LL C +L ++ +L+ L++ I
Sbjct: 109 MMLVESSLGSFLLSCIVLLSLLAFLQRFLIIYI 141
>U64601-3|ABC71817.1| 485|Caenorhabditis elegans Temporarily
assigned gene nameprotein 126, isoform c protein.
Length = 485
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = -2
Query: 628 WFSYSNQK----IMSMFV-NWRKCFQENMSIGC--HP*RTTGVVWFKRHLTSIIF 485
W YSN I +M+ ++R+CF++ +S GC H RT V K H S IF
Sbjct: 433 WLGYSNSVLNPIIYTMYNGDFRRCFRDLLSFGCVQHHRRTMSVK--KLHQQSTIF 485
>U64601-2|AAQ82847.1| 592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 126, isoform b protein.
Length = 592
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = -2
Query: 628 WFSYSNQK----IMSMFV-NWRKCFQENMSIGC--HP*RTTGVVWFKRHLTSIIF 485
W YSN I +M+ ++R+CF++ +S GC H RT V K H S IF
Sbjct: 540 WLGYSNSVLNPIIYTMYNGDFRRCFRDLLSFGCVQHHRRTMSVK--KLHQQSTIF 592
>U64601-1|AAB04573.2| 564|Caenorhabditis elegans Temporarily
assigned gene nameprotein 126, isoform a protein.
Length = 564
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = -2
Query: 628 WFSYSNQK----IMSMFV-NWRKCFQENMSIGC--HP*RTTGVVWFKRHLTSIIF 485
W YSN I +M+ ++R+CF++ +S GC H RT V K H S IF
Sbjct: 512 WLGYSNSVLNPIIYTMYNGDFRRCFRDLLSFGCVQHHRRTMSVK--KLHQQSTIF 564
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
C48B4.4c protein.
Length = 1704
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 265 SPITINCICMYYYSVL*STICSIFL*MF 182
SPIT + Y +L S IC IFL MF
Sbjct: 1163 SPITFYSASLIYDGILYSLICLIFLFMF 1190
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
C48B4.4b protein.
Length = 1691
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 265 SPITINCICMYYYSVL*STICSIFL*MF 182
SPIT + Y +L S IC IFL MF
Sbjct: 1150 SPITFYSASLIYDGILYSLICLIFLFMF 1177
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
C48B4.4a protein.
Length = 1689
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 265 SPITINCICMYYYSVL*STICSIFL*MF 182
SPIT + Y +L S IC IFL MF
Sbjct: 1148 SPITFYSASLIYDGILYSLICLIFLFMF 1175
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 265 SPITINCICMYYYSVL*STICSIFL*MF 182
SPIT + Y +L S IC IFL MF
Sbjct: 1163 SPITFYSASLIYDGILYSLICLIFLFMF 1190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,216,170
Number of Sequences: 27780
Number of extensions: 278485
Number of successful extensions: 700
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -