Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j15f
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.1  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   4.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 512 KPDNASRPLWVAPNGHIFLE 571
           K D+  RP+ ++ N H+F+E
Sbjct: 542 KHDHQGRPISISKNQHLFVE 561


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 148 LRNFNNKYIVRQTFTEKL 201
           L+  N+KYI++ T T KL
Sbjct: 327 LKKVNSKYILKSTLTPKL 344


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 421 PCCCHARC 444
           PC CHARC
Sbjct: 478 PCRCHARC 485


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 421 PCCCHARC 444
           PC CHARC
Sbjct: 478 PCRCHARC 485


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = -2

Query: 646 VWGSANWFSYSNQKIMSMFVNWRKCFQENMSIGCHP*RTTGVVWF 512
           + G   W  Y+N K    +   R+  Q     G H  +   +VW+
Sbjct: 29  ITGDEKWVVYNNIKRKRSWSRPRESAQTTSKAGIHRKKVLLLVWW 73


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 566 RKYVHWVPPIKDD 528
           + Y  WV P+KDD
Sbjct: 146 KDYYIWVDPVKDD 158


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 557  VHWVPPIKDDW 525
            V W PP ++DW
Sbjct: 995  VTWKPPPREDW 1005


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,770
Number of Sequences: 438
Number of extensions: 3840
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)