Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j14r
(391 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce... 96 2e-21
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 2.4
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 3.1
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 25 5.5
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 25 5.5
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 25 5.5
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 24 9.5
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p... 24 9.5
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 24 9.5
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 24 9.5
>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 95.9 bits (228), Expect = 2e-21
Identities = 47/80 (58%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Frame = -1
Query: 259 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAI 83
M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ + VD A GR K Y + G +
Sbjct: 1 MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59
Query: 82 RRMGESDDCIVRLTKKDGIL 23
R GESDDCI RLT +DG+L
Sbjct: 60 RSKGESDDCINRLTTQDGLL 79
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 159 SCTEAWSLAWMRRLLAEHFLGQYKST 236
S T+A SL W + +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 177 SLAWMRRLLAEHFLGQYKSTNSPASFCILYV 269
SL M +L EH+ G++ SP CI+ V
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPV 605
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 295 KLLKNFPLQTYKMQNDAGEFVDLYC 221
+ + F TYK ND GEF YC
Sbjct: 196 RFMDGFSSHTYKFVNDKGEF--YYC 218
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/47 (25%), Positives = 19/47 (40%)
Frame = +3
Query: 129 PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 269
P+ A+T TE W++A+ +A F S C Y+
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYL 528
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = +2
Query: 83 DSPT--DNIHFRCVSSTTCGGVYVSN 154
D PT D I C CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 23.8 bits (49), Expect = 9.5
Identities = 12/54 (22%), Positives = 21/54 (38%)
Frame = +3
Query: 108 LDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 269
L VS+ S ++ W+ W L E F+ + TN+ + Y+
Sbjct: 170 LAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQETFIYWDRCTNACLRLLLCYI 223
>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 402
Score = 23.8 bits (49), Expect = 9.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 15 FLASIPSFFVNLTMQSSDSPILRIAPQTTYILDVSAARP 131
F S+P V L D+P + + P ++YI SA P
Sbjct: 288 FPLSLPGQSVELAW---DAPGMAVGPNSSYITSTSAGTP 323
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 23.8 bits (49), Expect = 9.5
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = -1
Query: 286 KNFPLQTYKMQNDAGEFVDLYCPRKCSASNRLIHAKD--HASVQ--LVIADVDPATGRAA 119
K+F T ND G L C R+ +AS+ D +SVQ +V+ P G
Sbjct: 57 KDFVYFTLPFPNDEGTVFGLSCTRQLNASSLKNIPSDVTRSSVQKAVVVITTSPPFGHIK 116
Query: 118 D 116
D
Sbjct: 117 D 117
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 234 TNSPASFCILYVCNGKFLSNFTVKTRRNVD 323
T SP++FC L VC +F++ +++D
Sbjct: 435 TVSPSNFCALEVCALQFVNGVHKSVVKHLD 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,113
Number of Sequences: 5004
Number of extensions: 29116
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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