Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j14f
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10302| Best HMM Match : VDE (HMM E-Value=4.4)                       29   1.3  
SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)                   28   3.9  
SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4)              27   6.8  
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)                    27   6.8  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)                    27   8.9  

>SB_10302| Best HMM Match : VDE (HMM E-Value=4.4)
          Length = 578

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +1

Query: 58  IDILSTFRRVLTVKLLKNFPLQTYKMQ--NDAGEFVDLYCPRKCSASNRLIHAKDHASVQ 231
           + +L+T    L   +  N  L T K+   +D+ EF D      CS  + +    D  S  
Sbjct: 395 LHVLATEHHALECSIGINEMLHTSKLSLVSDSDEFFDAVSDIACSLPDEMPSDSDEESEV 454

Query: 232 LVIADV-DPATGRAADTS 282
            V AD+ DPA+ + + T+
Sbjct: 455 YVPADITDPASDQESTTT 472


>SB_35368| Best HMM Match : UIM (HMM E-Value=6.3e-06)
          Length = 362

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 92  P*NYLKTFHCRHIKCRTTPVNSLTCTARGNARPATASS 205
           P N+ KTF CR+  C  TP  S  C  +   +  +A S
Sbjct: 89  PRNFTKTFSCRY--CFQTPEESYHCIKKTTCKVVSAVS 124


>SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4)
          Length = 1145

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 30/111 (27%), Positives = 46/111 (41%)
 Frame = -3

Query: 341 TMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYK 162
           T  +S    +R+A QT Y     A + +  + +A T  TEA + A   +  A  F     
Sbjct: 355 TTVTSAEITVRLANQTAYQKRTQAQQALQNAETARTEATEAKTAAEHAQRAAGEFNTNAT 414

Query: 161 STNSPASFCILYVCNGKFLSNFTVKTRRNVDNMSIKHEKPTRPHGTRN*QM 9
           +  S A+  +  V  G       +KT  +V NM+   +  T    TR  QM
Sbjct: 415 AVLSEATTALHNVTQG-------IKTIESVTNMT--RDSETLAQSTREKQM 456


>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
          Length = 841

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 55  NMKNLHVHTVHGIDRC 8
           NM ++H+HTV  ID C
Sbjct: 69  NMSSIHLHTVRSIDLC 84


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -3

Query: 362 PSFFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAIT 234
           P   V ++ Q   +P + +AP+TT + + + A      T   T
Sbjct: 396 PEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTT 438


>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
          Length = 811

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 179 FLGQYKSTNSPASFCILYVCNGKFLSNFTVKTRRNVD 69
           F  +Y+ T+ P    +   C G  +SNFT++T + +D
Sbjct: 23  FGSKYRLTSFPRD--VTQQCLGNTISNFTIRTPKTLD 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,577,299
Number of Sequences: 59808
Number of extensions: 254120
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)