Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j13r
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    31   0.18 
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    27   2.9  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   3.8  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    27   3.8  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   5.0  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    26   5.0  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   6.6  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 21/86 (24%), Positives = 44/86 (51%)
 Frame = +2

Query: 287  GPLGLKSFDAVGPVGHVVMVRGCLNCQRQILITLSVHNLEVDLVVLPQRNELPADFWTRL 466
            GP GL + D +   GH V++    + +   L+   + N+++D  V+ +R +L  D    +
Sbjct: 1764 GPAGLAAADQLNRAGHHVVIYERAD-RPGGLLQYGIPNMKLDKKVVERRIQLMIDEGIEV 1822

Query: 467  VLAIAVGKSAIVAVLIVQRQSETVAL 544
            +  + VGK+  V++  + +  + V L
Sbjct: 1823 LTNVEVGKNGDVSLDELHKVYDAVVL 1848


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 722 DKKSEVITKCRKQTHTKQQDELHGVRLPAM 633
           DKKS++  K RK+ H  ++D +   R P +
Sbjct: 488 DKKSKMAKKLRKENHDLERDLIRASRHPEL 517


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -1

Query: 733 RSTRTRRAKSSPNVVN----KLIRNNKMNCMEYAYQLWLQGSKDIVREC 599
           RS++ RR +      N    KL  NN    +E   Q +LQG K+ +++C
Sbjct: 163 RSSKRRRREGPTMKANIQRQKLDFNNLKKAIELRNQKFLQGIKEYIKKC 211


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 745 KRANRSTRTRRAKSSPNVVNKLIRNNKMNCMEYAYQLWLQGSKD 614
           K+ +   + R++    +   K+++ NK+N +E A Q W +  K+
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 26/96 (27%), Positives = 36/96 (37%)
 Frame = -1

Query: 400  IVNTQRNQYLTLAVQTTPNHNHMAYGANSVEGFKAQWTLQPAKYDNDVLFFMYNREYNEA 221
            +V+T  +Q+L +     P     A+G NS+   KA     P   DN +     N   N  
Sbjct: 813  LVDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGRFTMPV-IDNPL-----NVRINAI 866

Query: 220  LVLSRPTDTWGNRMAFGYSGRVVGSPEQYAWGIKAF 113
            L   R  D     M   Y  R  G P+  +W    F
Sbjct: 867  LGKLRSLDKGSTIMPSLYLVRGDGDPQLRSWFFSHF 902


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 177 AMRLPQVSVGLESTNASLYSRLYMKNKTSLSYLAGCRV 290
           A+RLP + V   +  A + +   +K K ++ ++AGCRV
Sbjct: 577 ALRLPPILVQRVTGEAIISAIFDIKAKRAVVHVAGCRV 614


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 186 LPQVSVGLESTNASLYSRLYMKNKTSLSYLAG 281
           LPQV++G  S +A     L  +N+T L+ ++G
Sbjct: 65  LPQVNIGANSFSAETPVDLKKENETELANISG 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,391
Number of Sequences: 5004
Number of extensions: 60521
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)