Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j13r
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70205-4|CAA94115.2|  528|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC006712-11|AAK39327.2|  308|Caenorhabditis elegans Hypothetical...    28   8.1  

>Z70205-4|CAA94115.2|  528|Caenorhabditis elegans Hypothetical
           protein C11H1.5 protein.
          Length = 528

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 97  MKSVLRKPLYPKRTARDFRPRGHCIRTPCGYPRC 198
           +K+     + PK   R +RPRG  +  P  YPRC
Sbjct: 455 IKNTCSDGIDPKFVKRWYRPRGSSVCVPYHYPRC 488


>AC006712-11|AAK39327.2|  308|Caenorhabditis elegans Hypothetical
           protein Y119C1B.10 protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 740 SKQIYEDKKSEVITKCRKQTHTKQQDELHGVRLPAM--APRLQR 615
           SK +YE  KSE +   R+Q      +++  VR PA+   PRLQR
Sbjct: 152 SKDVYEMAKSEGLRVSRRQC----SNQVRNVRAPAVEPRPRLQR 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,457,533
Number of Sequences: 27780
Number of extensions: 341299
Number of successful extensions: 1116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)