Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j12r
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    30   0.30 
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    29   0.70 
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    27   1.6  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   2.8  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    25   6.5  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   8.6  

>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 307 DRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAILV 206
           ++ KN ++I+ + + PF+ RLY    DH+   L+
Sbjct: 135 EQTKNERQILEEVRHPFICRLYYAFQDHDRLYLI 168


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 198 DDPTNIALLWS-VFTQYNRDRKGSL 269
           DDP N+  +W+ VF Q+NR++ GSL
Sbjct: 212 DDP-NVLEIWNIVFIQFNREKDGSL 235


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 213 YWLGHQSIRAAYSSTQEIVLVMYRCI 136
           Y  G QSI   Y  T+EI+L +YR I
Sbjct: 51  YTFGSQSISKLYWGTKEILLPVYRTI 76


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 516 AVKSLAVSNTKDMXAVGLDGNSWP 445
           AVK+L +SNT+D   +    +SWP
Sbjct: 412 AVKNLRLSNTRDNIVLNPSVDSWP 435


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 172 RRVRSANTLMTQPILHCCGQFLHSTIEIEK 261
           +RV S   +  QP L  C    HS  EIEK
Sbjct: 458 KRVESLERVKVQPSLRICISTGHSAEEIEK 487


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 322 RXAKSDRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAILV 206
           R    D HK P+K + D      + L    TD N  I +
Sbjct: 68  RRGSLDEHKQPRKFLVDVDKTLNALLESEDTDRNMQITI 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,429
Number of Sequences: 5004
Number of extensions: 42574
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)