Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j12r
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657...    29   2.2  
02_03_0037 + 14215616-14216941                                         28   6.7  

>02_05_1213 -
           34963971-34964658,34965030-34965270,34965347-34965736,
           34966515-34966781,34966881-34967249,34967931-34968014,
           34968113-34968226,34969952-34970018
          Length = 739

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 163 NRSSHVQMYFTQRRPSPVYSLDFDSTKLIAAAD 65
           NRSS+   +F  R P PV ++++ S ++  A D
Sbjct: 659 NRSSNPSGFFDNRNPLPVITMEYSSGRIEGARD 691


>02_03_0037 + 14215616-14216941
          Length = 441

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 130 QRRPSPVYSLDFDSTKLIAAADRGXT 53
           +++P PV   +F+STK +A A RG T
Sbjct: 49  KKKPQPVPLGEFNSTKFVAPAYRGPT 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,245,166
Number of Sequences: 37544
Number of extensions: 251126
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)