Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j12r
         (613 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF174606-1|AAF04527.1|  406|Homo sapiens F-box protein Fbw3 prot...    48   3e-05
BC063415-1|AAH63415.1|  412|Homo sapiens F-box and WD repeat dom...    46   1e-04
AL627424-2|CAI41027.1|  412|Homo sapiens F-box and WD repeat dom...    46   1e-04
AL627144-3|CAI12232.1|  412|Homo sapiens F-box and WD repeat dom...    46   1e-04
AF281859-1|AAG22739.1|  412|Homo sapiens dactylin protein.             46   1e-04
BC007380-1|AAH07380.2|  293|Homo sapiens FBXW4 protein protein.        43   7e-04

>AF174606-1|AAF04527.1|  406|Homo sapiens F-box protein Fbw3
           protein.
          Length = 406

 Score = 48.0 bits (109), Expect = 3e-05
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = -1

Query: 307 DRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRS-SHVQMYFT 131
           D   + +K V + ++P  S LYC++TD N+ +  GSS YS   L+D   R+  H     +
Sbjct: 314 DCRTSVRKCVMEWEEPHNSTLYCLQTDGNHLLATGSSFYSVVRLWDRHQRACPHTFPLTS 373

Query: 130 QRRPSPVYSLDFDSTKLIAA 71
            R  SPVY L   +  L AA
Sbjct: 374 TRLGSPVYCLHLTTKHLYAA 393


>BC063415-1|AAH63415.1|  412|Homo sapiens F-box and WD repeat domain
           containing 4 protein.
          Length = 412

 Score = 46.0 bits (104), Expect = 1e-04
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = -1

Query: 307 DRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRSS-HVQMYFT 131
           D   + +K V + ++P  S LYC++TD N+ +  GSS Y    L+D R R+  H     +
Sbjct: 320 DLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYYGVVRLWDRRQRACLHAFPLTS 379

Query: 130 QRRPSPVYSLDFDSTKLIAA 71
               SPVY L   +  L AA
Sbjct: 380 TPLSSPVYCLRLTTKHLYAA 399


>AL627424-2|CAI41027.1|  412|Homo sapiens F-box and WD repeat domain
           containing 4 protein.
          Length = 412

 Score = 46.0 bits (104), Expect = 1e-04
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = -1

Query: 307 DRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRSS-HVQMYFT 131
           D   + +K V + ++P  S LYC++TD N+ +  GSS Y    L+D R R+  H     +
Sbjct: 320 DLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYYGVVRLWDRRQRACLHAFPLTS 379

Query: 130 QRRPSPVYSLDFDSTKLIAA 71
               SPVY L   +  L AA
Sbjct: 380 TPLSSPVYCLRLTTKHLYAA 399


>AL627144-3|CAI12232.1|  412|Homo sapiens F-box and WD repeat domain
           containing 4 protein.
          Length = 412

 Score = 46.0 bits (104), Expect = 1e-04
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = -1

Query: 307 DRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRSS-HVQMYFT 131
           D   + +K V + ++P  S LYC++TD N+ +  GSS Y    L+D R R+  H     +
Sbjct: 320 DLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYYGVVRLWDRRQRACLHAFPLTS 379

Query: 130 QRRPSPVYSLDFDSTKLIAA 71
               SPVY L   +  L AA
Sbjct: 380 TPLSSPVYCLRLTTKHLYAA 399


>AF281859-1|AAG22739.1|  412|Homo sapiens dactylin protein.
          Length = 412

 Score = 46.0 bits (104), Expect = 1e-04
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = -1

Query: 307 DRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRSS-HVQMYFT 131
           D   + +K V + ++P  S LYC++TD N+ +  GSS Y    L+D R R+  H     +
Sbjct: 320 DLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYYGVVRLWDRRQRACLHAFPLTS 379

Query: 130 QRRPSPVYSLDFDSTKLIAA 71
               SPVY L   +  L AA
Sbjct: 380 TPLSSPVYCLRLTTKHLYAA 399


>BC007380-1|AAH07380.2|  293|Homo sapiens FBXW4 protein protein.
          Length = 293

 Score = 43.2 bits (97), Expect = 7e-04
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = -1

Query: 307 DRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRSS-HVQMYFT 131
           D   + +K V + ++P  S LYC++TD N+ +  GSS Y     +D R R+  H     +
Sbjct: 201 DLRTSVRKCVMEWEEPHDSTLYCLQTDGNHLLATGSSYYGVVRPWDRRQRACLHAFPLTS 260

Query: 130 QRRPSPVYSLDFDSTKLIAA 71
               SPVY L   +  L AA
Sbjct: 261 TPLSSPVYCLRLTTKHLYAA 280


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,738,027
Number of Sequences: 237096
Number of extensions: 1361191
Number of successful extensions: 2210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2210
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)