Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j12r
         (613 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094851-1|AAM11204.1|  410|Drosophila melanogaster RE11703p pro...    49   4e-06
AE014296-3353|ABC66162.1|  410|Drosophila melanogaster CG33969-P...    49   4e-06
AE014296-3352|AAF51589.2|  410|Drosophila melanogaster CG33969-P...    49   4e-06
AY059437-1|AAL13343.1|  441|Drosophila melanogaster GH03570p pro...    28   8.6  
AE014134-1841|AAF52916.2|  842|Drosophila melanogaster CG5034-PA...    28   8.6  

>AY094851-1|AAM11204.1|  410|Drosophila melanogaster RE11703p
           protein.
          Length = 410

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
 Frame = -1

Query: 307 DRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRSSHVQMYFTQ 128
           DR  +    ++D  DPF S  Y ++ D  +A+LVG++ ++R  L+D R +  +VQ+YF  
Sbjct: 300 DRRVDRDVAIWD--DPFDSSFYSLEYDGLHAVLVGTNRHARVNLYDIRMK-KYVQLYFPG 356

Query: 127 RRP-----SPVYSLDFDSTKLIAAAD 65
           R       SPVYSL  DS  +  A D
Sbjct: 357 RTRSHNGLSPVYSLACDSQYMFVATD 382


>AE014296-3353|ABC66162.1|  410|Drosophila melanogaster CG33969-PB,
           isoform B protein.
          Length = 410

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
 Frame = -1

Query: 307 DRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRSSHVQMYFTQ 128
           DR  +    ++D  DPF S  Y ++ D  +A+LVG++ ++R  L+D R +  +VQ+YF  
Sbjct: 300 DRRVDRDVAIWD--DPFDSSFYSLEYDGLHAVLVGTNRHARVNLYDIRMK-KYVQLYFPG 356

Query: 127 RRP-----SPVYSLDFDSTKLIAAAD 65
           R       SPVYSL  DS  +  A D
Sbjct: 357 RTRSHNGLSPVYSLACDSQYMFVATD 382


>AE014296-3352|AAF51589.2|  410|Drosophila melanogaster CG33969-PA,
           isoform A protein.
          Length = 410

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
 Frame = -1

Query: 307 DRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRSSHVQMYFTQ 128
           DR  +    ++D  DPF S  Y ++ D  +A+LVG++ ++R  L+D R +  +VQ+YF  
Sbjct: 300 DRRVDRDVAIWD--DPFDSSFYSLEYDGLHAVLVGTNRHARVNLYDIRMK-KYVQLYFPG 356

Query: 127 RRP-----SPVYSLDFDSTKLIAAAD 65
           R       SPVYSL  DS  +  A D
Sbjct: 357 RTRSHNGLSPVYSLACDSQYMFVATD 382


>AY059437-1|AAL13343.1|  441|Drosophila melanogaster GH03570p
           protein.
          Length = 441

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = -1

Query: 301 HKNPKKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRSSHVQMYFTQRR 122
           H+N  KI Y    P  S      ++      + S    R  +F +++ S H  + ++   
Sbjct: 115 HQNQTKIHYTPSVP--SAADAKSSERERQCQLESDIAERSTVFKSQSSSDHEHIEYSGET 172

Query: 121 PSPVYSLDFDSTK 83
           PSP  SL    TK
Sbjct: 173 PSPSASLSQSQTK 185


>AE014134-1841|AAF52916.2|  842|Drosophila melanogaster CG5034-PA
           protein.
          Length = 842

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = -1

Query: 301 HKNPKKIVYDAKDPFLSRLYCVKTDHNNAILVGSSEYSRCVLFDARNRSSHVQMYFTQRR 122
           H+N  KI Y    P  S      ++      + S    R  +F +++ S H  + ++   
Sbjct: 115 HQNQTKIHYTPSVP--SAADAKSSERERQCQLESDIAERSTVFKSQSSSDHEHIEYSGET 172

Query: 121 PSPVYSLDFDSTK 83
           PSP  SL    TK
Sbjct: 173 PSPSASLSQSQTK 185


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,004,452
Number of Sequences: 53049
Number of extensions: 437818
Number of successful extensions: 943
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)