Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j12r
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical...    31   0.49 
AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical...    31   0.49 
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3b protein.
          Length = 622

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 322 RXAKSDRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAIL 209
           R  K  RHK  K ++Y AK P +S ++    +HN+ +L
Sbjct: 137 RSIKDIRHKECKNMMYSAKLPTVSVIFPFHEEHNSTLL 174


>AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3a protein.
          Length = 684

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 322 RXAKSDRHKNPKKIVYDAKDPFLSRLYCVKTDHNNAIL 209
           R  K  RHK  K ++Y AK P +S ++    +HN+ +L
Sbjct: 199 RSIKDIRHKECKNMMYSAKLPTVSVIFPFHEEHNSTLL 236


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +2

Query: 98   VKTINXRWSSLGEIHLYMTRTISCVEEYAA 187
            + TI+  WS + E+ +  TRT+S +++Y++
Sbjct: 1528 IDTIDEIWSPMREVDITETRTVSGMDQYSS 1557


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,669,916
Number of Sequences: 27780
Number of extensions: 237115
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)