Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j12f
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   4.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.2  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   6.2  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   8.3  

>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 367 LTKPFKHCHFSTNYCIVSMNRYIV 296
           LT+ F H H+    C   +N+YIV
Sbjct: 163 LTQKFDHSHYVQGVCWDPLNQYIV 186


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 288  YTYYKIFVKGINIFFTDNKLVINGNIRSFLTFFSGLD 178
            Y+Y KI  KG+N   +  ++++  N+ +     + LD
Sbjct: 2484 YSYLKILGKGVNELKSSKQVILPENLVNLFNCLASLD 2520


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 160 SVCSDSVKTTEESQKGSYIAIYN*LIICKKYIYSLDKYFIVCIV*KLC 303
           +V + S K    S+K  +  + N +I+   Y+Y L K +IVC    LC
Sbjct: 13  AVFASSDKPNNCSRKNMFF-LKN-IIVLSNYLYLLYKAWIVCTTISLC 58


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 391 MFEYFLTTLTKPFKHCHFSTNYCIVSMN 308
           ++E+      K F HCHF +N+ I  ++
Sbjct: 249 LWEWISDDNGKKFSHCHFWSNFEIADLD 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,163
Number of Sequences: 5004
Number of extensions: 44003
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)