Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j12f
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0095 + 12482908-12483111,12485906-12486340,12486434-12486835     33   0.13 
01_03_0096 + 12492502-12492708,12500878-12501294,12501397-12501816     31   0.52 
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892     29   2.1  
12_02_0718 + 22491241-22491897,22491989-22492126,22493017-224931...    28   4.8  

>01_03_0095 + 12482908-12483111,12485906-12486340,12486434-12486835
          Length = 346

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -1

Query: 282 YYKIFVKGINIFFTDNKLVINGNIRSFLTFFS 187
           YYK+  +G  +FF+DN+L +N  + + +T F+
Sbjct: 253 YYKLLPQGKGLFFSDNQLRVNATMNALVTRFA 284


>01_03_0096 + 12492502-12492708,12500878-12501294,12501397-12501816
          Length = 347

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 282 YYKIFVKGINIFFTDNKLVINGNIRSFLTFFS 187
           YYK+    + +FF+DN+L +N  + + +T F+
Sbjct: 251 YYKLLPLDLGLFFSDNQLRVNATMNALVTRFA 282


>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
          Length = 291

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 282 YYKIFVKGINIFFTDNKLVINGNIRSFLTFFS 187
           YYK+    + +FF+DN+L +N  + + ++ F+
Sbjct: 192 YYKLLPLNLGLFFSDNQLRVNATLGASVSSFA 223


>12_02_0718 +
           22491241-22491897,22491989-22492126,22493017-22493142,
           22493389-22493493,22493650-22494046,22494144-22494273,
           22494358-22494652,22494736-22495005
          Length = 705

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 557 ICIGNCKILIDIGISRCN 504
           + IG C  L++IG+S+CN
Sbjct: 375 LAIGGCNNLVEIGLSKCN 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,326,778
Number of Sequences: 37544
Number of extensions: 214329
Number of successful extensions: 299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)