Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j12f
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm rece...    33   0.15 
U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AC006777-7|AAK72306.2|  367|Caenorhabditis elegans Seven tm rece...    29   2.5  
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p...    27   7.5  
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 221 protein.
          Length = 367

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = -3

Query: 514 LDVTQIHKLFDPSI*FNSITSIFTA*PYDIGIPLF**IYVGMFEYF---LTTLTKPFKHC 344
           + + Q+   F  S     I  I    P  IG+  +  +Y  +FE F   +T LT PF H 
Sbjct: 12  IQIQQLSAAFSISFNIFLIHLIVNKSPKQIGVYKYFMLYFSIFEIFYGIVTALTSPFHHT 71

Query: 343 HFSTNYCIVSMNRYIV--FILYIL 278
            ++T   I+S     +  F+L IL
Sbjct: 72  QYATYSTIISSKDRALSHFVLNIL 95


>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
 Frame = -3

Query: 358 PFKHCHFSTNYC-----IVSMNRYIVFILYI---L*NICQGNKYIFY 242
           P + C  S+++C     I+ +N + VF+ YI   L N+C  N  IFY
Sbjct: 63  PPQKCQPSSHWCSIRCAIIIVNNFFVFMYYIFLVLVNVCNNNLLIFY 109


>AC006777-7|AAK72306.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 222 protein.
          Length = 367

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -3

Query: 436 PYDIGIPLF**IYVGMFEYF---LTTLTKPFKHCHFSTNYCIVS 314
           P  IG   F  +Y   FE F   +  LT PF H  ++T   I+S
Sbjct: 38  PTQIGAYKFLMLYFSFFEIFYGIVVALTSPFHHTQYATYLAIIS 81


>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
           protein C53B4.4e protein.
          Length = 1544

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 379 FLTTLTKPFKHCHFSTNYCIVSMNRY 302
           F T LTKP    HFS  Y +VS + Y
Sbjct: 618 FQTILTKPLTTFHFSVFYFLVSHHLY 643


>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
           protein C53B4.4b protein.
          Length = 1586

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 379 FLTTLTKPFKHCHFSTNYCIVSMNRY 302
           F T LTKP    HFS  Y +VS + Y
Sbjct: 618 FQTILTKPLTTFHFSVFYFLVSHHLY 643


>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
           protein C53B4.4a protein.
          Length = 1584

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 379 FLTTLTKPFKHCHFSTNYCIVSMNRY 302
           F T LTKP    HFS  Y +VS + Y
Sbjct: 618 FQTILTKPLTTFHFSVFYFLVSHHLY 643


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,890,717
Number of Sequences: 27780
Number of extensions: 237555
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)