Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j12f
(591 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.2
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 22 3.9
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 22 3.9
DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly pro... 22 5.2
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 21 9.0
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 21 9.0
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 21 9.0
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 152 KYVLCVLTPSRPLKKVKKDLIL 217
+++ C+L SRP KK+ K IL
Sbjct: 301 QWLPCLLRMSRPGKKITKKTIL 322
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 152 KYVLCVLTPSRPLKKVKKDLIL 217
+++ C+L SRP KK+ K IL
Sbjct: 301 QWLPCLLRMSRPGKKITKKTIL 322
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 152 KYVLCVLTPSRPLKKVKKDLIL 217
+++ C+L SRP KK+ K IL
Sbjct: 301 QWLPCLLRMSRPGKKITKKTIL 322
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 152 KYVLCVLTPSRPLKKVKKDLIL 217
+++ C+L SRP KK+ K IL
Sbjct: 301 QWLPCLLRMSRPGKKITKKTIL 322
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 152 KYVLCVLTPSRPLKKVKKDLIL 217
+++ C+L SRP KK+ K IL
Sbjct: 301 QWLPCLLRMSRPGKKITKKTIL 322
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 152 KYVLCVLTPSRPLKKVKKDLIL 217
+++ C+L SRP KK+ K IL
Sbjct: 301 QWLPCLLRMSRPGKKITKKTIL 322
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 152 KYVLCVLTPSRPLKKVKKDLIL 217
+++ C+L SRP KK+ K IL
Sbjct: 369 QWLPCLLRMSRPGKKITKKTIL 390
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 152 KYVLCVLTPSRPLKKVKKDLIL 217
+++ C+L SRP KK+ K IL
Sbjct: 369 QWLPCLLRMSRPGKKITKKTIL 390
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 22.2 bits (45), Expect = 3.9
Identities = 5/13 (38%), Positives = 11/13 (84%)
Frame = -2
Query: 572 KILAKICIGNCKI 534
+++ ++C GNCK+
Sbjct: 236 RVIPQVCSGNCKL 248
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 22.2 bits (45), Expect = 3.9
Identities = 5/13 (38%), Positives = 11/13 (84%)
Frame = -2
Query: 572 KILAKICIGNCKI 534
+++ ++C GNCK+
Sbjct: 236 RVIPQVCSGNCKL 248
>DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly
protein 9 protein.
Length = 423
Score = 21.8 bits (44), Expect = 5.2
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -2
Query: 410 LVNICGYV*IFFNNIDETF 354
+ ++ GY I +NN D++F
Sbjct: 202 IADVEGYALIIYNNADDSF 220
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 21.0 bits (42), Expect = 9.0
Identities = 6/23 (26%), Positives = 14/23 (60%)
Frame = +1
Query: 472 RWKDRIICGFVLHLEIPMSINIL 540
+W D+I + + +P S+N++
Sbjct: 71 QWHDKIFVTMLRYNGVPSSLNVI 93
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 21.0 bits (42), Expect = 9.0
Identities = 6/23 (26%), Positives = 14/23 (60%)
Frame = +1
Query: 472 RWKDRIICGFVLHLEIPMSINIL 540
+W D+I + + +P S+N++
Sbjct: 71 QWHDKIFVTMLRYNGVPSSLNVI 93
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 21.0 bits (42), Expect = 9.0
Identities = 6/23 (26%), Positives = 14/23 (60%)
Frame = +1
Query: 472 RWKDRIICGFVLHLEIPMSINIL 540
+W D+I + + +P S+N++
Sbjct: 71 QWHDKIFVTMLRYNGVPSSLNVI 93
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,276
Number of Sequences: 438
Number of extensions: 3353
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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