Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j11f
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    30   0.23 
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     28   0.94 
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   1.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   5.0  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   5.0  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.6  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   6.6  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   8.8  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   8.8  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   8.8  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   8.8  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 144 TLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVS 257
           TLP   +T  +T R  + PPS   SNR +  + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 176 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 313
           N+  S+ +      Q  + +      IY PD   Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 184 LFVLQAVEYFPGKVLLQQRLRVGSLELAETSLQFLEG--CGVDHC 56
           LFV+  VEY PG  L    LR GS    +T+ +FL    CG+++C
Sbjct: 83  LFVV--VEYMPGGELFDCMLRKGSFTEQDTA-KFLWQILCGLEYC 124


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 174 RTKRPHSDPPSLTASNRVSRTWTPASVS 257
           R  RP  +PP L+ASN    T  P++ S
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPPSNGS 418


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 308 IIEDYHNGFKKTDKHPPKNW 367
           I++  ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -3

Query: 189 EVFLFFRLSNTSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFLAL 37
           E + F RL  T    +F S + E      L  AS  S+VAA  I AAF+ L
Sbjct: 518 EKYDFNRLLAT-FAMHFSSEEDEIQQTKKLNRASVISKVAALIITAAFIIL 567


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +1

Query: 439 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPH 567
           P+   VP  P P  VPV  + GQ L  PV P        LPPH
Sbjct: 671 PVVPEVPSVPQPPAVPVVPEAGQ-LNEPVVP-------PLPPH 705


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 389 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 511
           N+D A EF++ T      S++G   N C+ +  YK   DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 159 TSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFL 43
           +SLV++     ++     +LKP + F  V A   VA FL
Sbjct: 384 SSLVKWLTKRKIKMASEGILKPLNEFQAVVARDSVAKFL 422


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 535 GRAQGHVLPPHRHVEGDPAAAHRRPLP 615
           GR Q  VLP       DPAA   +PLP
Sbjct: 513 GRCQSMVLPIMNKWTVDPAAKDVKPLP 539


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 458 PFNPCLTESQYKEMED--KVSGTLSSLEGELKGTFYPLTGMSKET 586
           P  P L   Q +  +D  K +  +     E+K  FY LTG+  +T
Sbjct: 41  PEAPLLDNEQRQSAQDFIKDNSEIVVSTSEIKNLFYELTGLDPDT 85


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 434 CGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSLEGELKGTFYPLTGMSK-ETQQQLIDD 607
           C    +  P    L  SQ+ ++ D +   L++L+ E    F  L G +  ET+QQLIDD
Sbjct: 771 CSLLKKSRPNERILIFSQFTQVLDILEYVLNTLDLE----FLRLDGSTPVETRQQLIDD 825


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 353 PPKNWGDV 376
           PPKNWGDV
Sbjct: 521 PPKNWGDV 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,511
Number of Sequences: 5004
Number of extensions: 48365
Number of successful extensions: 209
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)