Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j11f
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.   347   7e-98
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.   323   1e-90
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.26 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.78 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.78 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   3.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score =  347 bits (852), Expect = 7e-98
 Identities = 158/186 (84%), Positives = 174/186 (93%)
 Frame = +2

Query: 59  MVDAATLEKLEAGFSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENL 238
           MVD A L+KLE GFSKL  SDSKSLLKKYL+++VFD LK KKTSF STLLDCIQSG+ENL
Sbjct: 1   MVDQAVLDKLETGFSKLSSSDSKSLLKKYLSKDVFDQLKTKKTSFDSTLLDCIQSGIENL 60

Query: 239 DSGVGIYAPDAESYSVFAELFDPIIEDYHNGFKKTDKHPPKNWGDVDTLGNLDPAGEFVV 418
           DSGVGIYAPDAE+Y++FA+LFDPIIEDYH GFKKTDKHPPK++GDVD+LGNLDPA EF+V
Sbjct: 61  DSGVGIYAPDAEAYTLFADLFDPIIEDYHGGFKKTDKHPPKDFGDVDSLGNLDPANEFIV 120

Query: 419 STRVRCGRSLEGYPFNPCLTESQYKEMEDKVSGTLSSLEGELKGTFYPLTGMSKETQQQL 598
           STRVRCGRSLEGYPFNPCLTE+QYKEME+KVS TLS LEGELKGTFYPLTGMSKETQQ+L
Sbjct: 121 STRVRCGRSLEGYPFNPCLTEAQYKEMEEKVSSTLSGLEGELKGTFYPLTGMSKETQQKL 180

Query: 599 IDDHFL 616
           IDDHFL
Sbjct: 181 IDDHFL 186


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score =  323 bits (793), Expect = 1e-90
 Identities = 146/170 (85%), Positives = 161/170 (94%)
 Frame = +2

Query: 107 LQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSV 286
           L  SDSKSLLKKYL+++VFD LK KKTSF STLLDCIQSG+ENLDSGVGIYAPDAE+Y++
Sbjct: 1   LSSSDSKSLLKKYLSKDVFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDAEAYTL 60

Query: 287 FAELFDPIIEDYHNGFKKTDKHPPKNWGDVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFN 466
           FA+LFDPIIEDYH GFKKTDKHPPK++GDVD+LGNLDPA EF+VSTRVRCGRSLEGYPFN
Sbjct: 61  FADLFDPIIEDYHGGFKKTDKHPPKDFGDVDSLGNLDPANEFIVSTRVRCGRSLEGYPFN 120

Query: 467 PCLTESQYKEMEDKVSGTLSSLEGELKGTFYPLTGMSKETQQQLIDDHFL 616
           PCLTE+QYKEME+KVS TLS LEGELKGTFYPLTGMSKETQQ+LIDDHFL
Sbjct: 121 PCLTEAQYKEMEEKVSSTLSGLEGELKGTFYPLTGMSKETQQKLIDDHFL 170


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = -2

Query: 454 PLERAAAAHAGGDHELAGGVEVAER---VHVSPVLGRVLVGLLEAIVVVLDDRVKQLGEH 284
           P+++ A     GD  L G + V ER   +   PV+ +  V  LEA++  LD    Q    
Sbjct: 106 PVKKEAVVE--GDLVLGGLMMVHERQDRLTCGPVMPQGGVQALEAMLYTLDKLNTQDIVP 163

Query: 283 GVRLGVRRV-DTDAGVQVLDTRLDAVK 206
           GVR+G   + D D     L+  +D +K
Sbjct: 164 GVRIGAHILDDCDNDTYGLEMSVDFIK 190



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 207 LTASNRVSRTWTPASVSTRRTPSRTPCS 290
           LT +NR+SR +  +  S +R    +P S
Sbjct: 740 LTKTNRISRIFNASKHSAKRPSFISPRS 767


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 454 VPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPHRHVEGDP 588
           VP   L +R+ V  DG +  ++  QP G  +  +LP  +  EG P
Sbjct: 570 VPSDVLYNRLVVSEDGSETFKYSSQPYGFPERLLLPKGKK-EGMP 613


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 454 VPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHVLPPHRHVEGDP 588
           VP   L +R+ V  DG +  ++  QP G  +  +LP  +  EG P
Sbjct: 570 VPSDVLYNRLVVSEDGSETFKYSSQPYGFPERLLLPKGKK-EGMP 613


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 154 GSIRQPEEQKDLIRIHPP 207
           GS  QP+EQ+ L  + PP
Sbjct: 33  GSAEQPKEQEPLPPVTPP 50


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 222 RVSRTWTPASVSTRRTPSRTP 284
           +V   W P  +  RRTP  TP
Sbjct: 352 QVFLNWMPRLLMMRRTPYSTP 372


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 36 QVPEKPQQWSTPQPSR 83
          Q P+ PQ+ S P PS+
Sbjct: 29 QSPQAPQRGSPPNPSQ 44


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 310 HRGLPQWLQEDRQAPAQEL 366
           H G   W QED  A  + L
Sbjct: 405 HHGSKSWTQEDMDAALEAL 423


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 243 PASVSTRRTPSRTPCSPS 296
           P  V  R TP+ T C P+
Sbjct: 199 PILVRARETPNYTACPPT 216


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 183 FLFFRLSNTSLVRYFFSSDLESD 115
           F+F  L   +LV Y   SD+ SD
Sbjct: 314 FVFGALLEFALVNYASRSDMHSD 336


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 183 FLFFRLSNTSLVRYFFSSDLESD 115
           F+F  L   +LV Y   SD+ SD
Sbjct: 314 FVFGALLEFALVNYASRSDMHSD 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,609
Number of Sequences: 438
Number of extensions: 3582
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)