Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j10f
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 165 2e-41
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 160 7e-40
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 93 2e-19
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 1.6
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 5.0
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 27 8.8
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265... 27 8.8
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 165 bits (402), Expect = 2e-41
Identities = 78/146 (53%), Positives = 104/146 (71%)
Frame = +3
Query: 147 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 326
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 327 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 506
+L R+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 507 VNMLRIAEPYIAWGYPNLKSVRELVY 584
+NMLR EPY+A+GYPNLKSVREL+Y
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIY 152
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 160 bits (389), Expect = 7e-40
Identities = 74/142 (52%), Positives = 102/142 (71%)
Frame = +3
Query: 159 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 338
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 339 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 518
+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 519 RIAEPYIAWGYPNLKSVRELVY 584
R EPY+A+GYPNLKSVREL+Y
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIY 151
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 93.1 bits (221), Expect = 2e-19
Identities = 52/154 (33%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Frame = +3
Query: 132 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 311
+E +++LP V E+VLK + +R + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 312 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 482
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 483 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVY 584
F++ AT+ L + EP+I +G+PNLK+V++L+Y
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIY 154
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 225 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 365
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 370 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 468
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 349 IVATTTFPGKPNWHLSSESVVSTKFH 426
+V +P NWHLSS S + K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598
>01_03_0289 -
14725832-14726114,14726216-14726298,14726432-14726545,
14727830-14728199,14728726-14728856,14728970-14729078,
14729257-14729378,14729522-14729625,14729849-14729953,
14730034-14730192,14730336-14730391,14730576-14730627,
14730725-14731031
Length = 664
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 610 HSAWRIHVXYTNSRTLFKLGYPQA 539
H+ WR+ V Y TL+ GY +A
Sbjct: 36 HAGWRLQVSYKGLETLYDDGYQKA 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,837,484
Number of Sequences: 37544
Number of extensions: 274980
Number of successful extensions: 624
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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