Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j09r
(408 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098993-8|AAC67465.2| 142|Caenorhabditis elegans Pterin carbin... 138 1e-33
U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical pr... 31 0.42
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 31 0.42
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 31 0.42
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 28 3.0
AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical ... 27 5.2
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical... 27 6.9
AC024838-5|AAY43990.1| 301|Caenorhabditis elegans Hypothetical ... 27 6.9
U28730-2|AAA68262.1| 1009|Caenorhabditis elegans Hypothetical pr... 26 9.1
AY943817-1|AAY18583.1| 703|Caenorhabditis elegans signal transd... 26 9.1
AL132952-23|CAN99759.1| 703|Caenorhabditis elegans Hypothetical... 26 9.1
AL132952-22|CAN86928.1| 567|Caenorhabditis elegans Hypothetical... 26 9.1
AL132952-21|CAB61149.2| 706|Caenorhabditis elegans Hypothetical... 26 9.1
>AF098993-8|AAC67465.2| 142|Caenorhabditis elegans Pterin
carbinolamine dehydrataseprotein 1 protein.
Length = 142
Score = 138 bits (334), Expect = 1e-33
Identities = 60/96 (62%), Positives = 74/96 (77%)
Frame = -2
Query: 380 RKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMD 201
RK L + ERT +L L +GWK+ RDAI+KEF FK+FNEAFGFMTRV L AEKMD
Sbjct: 42 RKKMPLLTESERTEQLSGLKTAGWKLVEGRDAIQKEFHFKDFNEAFGFMTRVGLKAEKMD 101
Query: 200 HHPEWFNVYNKLQVTLSSHDVNGLSKRDIKMASFMD 93
HHPEWFNVYNK+ +TLS+HD GLS D+K+A+F++
Sbjct: 102 HHPEWFNVYNKVDITLSTHDCGGLSPNDVKLATFIE 137
>U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical
protein R07G3.3c protein.
Length = 1316
Score = 30.7 bits (66), Expect = 0.42
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = -2
Query: 338 ELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEK----MDHHPEWFNVYN 171
E+K L ++ +++A+EKE Q F E + T +L AE M E N +
Sbjct: 132 EIKKLTNEQASLRHSKEALEKEIQGIQF-ERQKYATERSLHAESKTWLMQEVSERDNKVS 190
Query: 170 KLQVTLSSHDVNGLSKR 120
L++ LS+ D+ G ++R
Sbjct: 191 SLRLELSNKDIQGANER 207
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical
protein R07G3.3a protein.
Length = 1982
Score = 30.7 bits (66), Expect = 0.42
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = -2
Query: 338 ELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEK----MDHHPEWFNVYN 171
E+K L ++ +++A+EKE Q F E + T +L AE M E N +
Sbjct: 132 EIKKLTNEQASLRHSKEALEKEIQGIQF-ERQKYATERSLHAESKTWLMQEVSERDNKVS 190
Query: 170 KLQVTLSSHDVNGLSKR 120
L++ LS+ D+ G ++R
Sbjct: 191 SLRLELSNKDIQGANER 207
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical
protein R07G3.3b protein.
Length = 1987
Score = 30.7 bits (66), Expect = 0.42
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = -2
Query: 338 ELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEK----MDHHPEWFNVYN 171
E+K L ++ +++A+EKE Q F E + T +L AE M E N +
Sbjct: 132 EIKKLTNEQASLRHSKEALEKEIQGIQF-ERQKYATERSLHAESKTWLMQEVSERDNKVS 190
Query: 170 KLQVTLSSHDVNGLSKR 120
L++ LS+ D+ G ++R
Sbjct: 191 SLRLELSNKDIQGANER 207
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 362 LNQEERTTELKPLLESGWKIQSNRDAIEKEF-QFKNFNE 249
L Q ER +K + +GWK+ N+DAI + QF +E
Sbjct: 5162 LAQPERREIVKQIESNGWKLLPNQDAISVFYTQFMETHE 5200
>AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical
protein F56H1.3 protein.
Length = 1174
Score = 27.1 bits (57), Expect = 5.2
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -2
Query: 383 KRKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKM 204
K+ A N E+ + L+P E KIQ+ + E+ F F+ E + L E +
Sbjct: 379 KKHFALGANTEQLSKALEPFYEISKKIQNLFNVWEEYFHFEKLEEKNKRFQKTTLKLETI 438
Query: 203 DHHPE 189
+ + E
Sbjct: 439 EQYVE 443
>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
protein Y111B2A.14 protein.
Length = 1481
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 380 RKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKEFQFK 261
RKM + + TE + +E+ K+ R A+E+E Q K
Sbjct: 1055 RKMREAEESARKETERRAKMETERKVAEARRAVERENQIK 1094
>AC024838-5|AAY43990.1| 301|Caenorhabditis elegans Hypothetical
protein Y59E9AL.8 protein.
Length = 301
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 243 KSFIKIFELKFLFYCVSVALNFPTRFQ*RFELSCAL 350
KSFIKI + FL VS+A RFE+SC L
Sbjct: 271 KSFIKIVQAHFLRITVSIASK-------RFEISCRL 299
>U28730-2|AAA68262.1| 1009|Caenorhabditis elegans Hypothetical protein
K10B2.5 protein.
Length = 1009
Score = 26.2 bits (55), Expect = 9.1
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = -2
Query: 368 DKLNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMT---RVALLAEKMDH 198
D+ NQ+ +++ + ++ R+ + EF + + + RV L AE DH
Sbjct: 933 DEKNQKVPLSQIDLTKCTNQSVEETRNGRDHEFHIELLIDQTPSLLEKRRVVLAAESSDH 992
Query: 197 HPEWFNVYNKLQVTLSS 147
W N N L S
Sbjct: 993 LASWLNAINDTLFVLRS 1009
>AY943817-1|AAY18583.1| 703|Caenorhabditis elegans signal
transducer and activatorof transcription STA-1 protein.
Length = 703
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 373 WLINLIKRSAQLSSNLYWNLVGKFRATETQ 284
W+++L++R+ QL+ L +GK A Q
Sbjct: 157 WMLDLLRRAPQLNDGLAQATIGKLTAITEQ 186
>AL132952-23|CAN99759.1| 703|Caenorhabditis elegans Hypothetical
protein Y51H4A.17c protein.
Length = 703
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 373 WLINLIKRSAQLSSNLYWNLVGKFRATETQ 284
W+++L++R+ QL+ L +GK A Q
Sbjct: 157 WMLDLLRRAPQLNDGLAQATIGKLTAITEQ 186
>AL132952-22|CAN86928.1| 567|Caenorhabditis elegans Hypothetical
protein Y51H4A.17b protein.
Length = 567
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 373 WLINLIKRSAQLSSNLYWNLVGKFRATETQ 284
W+++L++R+ QL+ L +GK A Q
Sbjct: 157 WMLDLLRRAPQLNDGLAQATIGKLTAITEQ 186
>AL132952-21|CAB61149.2| 706|Caenorhabditis elegans Hypothetical
protein Y51H4A.17a protein.
Length = 706
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 373 WLINLIKRSAQLSSNLYWNLVGKFRATETQ 284
W+++L++R+ QL+ L +GK A Q
Sbjct: 157 WMLDLLRRAPQLNDGLAQATIGKLTAITEQ 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,803,739
Number of Sequences: 27780
Number of extensions: 160950
Number of successful extensions: 499
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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