Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j09f
         (456 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21298| Best HMM Match : No HMM Matches (HMM E-Value=.)             136   6e-33
SB_43378| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   1e-31
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.34 
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  30   1.0  
SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)               28   4.2  
SB_47716| Best HMM Match : K_tetra (HMM E-Value=1.5e-17)               27   7.4  
SB_7958| Best HMM Match : NCD3G (HMM E-Value=2.9)                      27   7.4  
SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)                       27   7.4  
SB_53148| Best HMM Match : rve (HMM E-Value=4.8e-21)                   27   9.7  
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)                 27   9.7  
SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)           27   9.7  
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                27   9.7  

>SB_21298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score =  136 bits (330), Expect = 6e-33
 Identities = 59/91 (64%), Positives = 71/91 (78%)
 Frame = +2

Query: 44  KLNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPEW 223
           KL+ E R  ELK LL +GW     RDAI K+F FKNFN+AFGFMTRVAL+AEKMDHHPEW
Sbjct: 29  KLSPERREKELKSLLSTGWVEAKTRDAIRKDFHFKNFNQAFGFMTRVALMAEKMDHHPEW 88

Query: 224 FNVYNKLQVTLSSHDVNGLSKRDIKMASFMD 316
            NVYNK+ +TL++HD  G+S  D+KMA F+D
Sbjct: 89  SNVYNKVNITLTTHDCGGISSNDVKMAEFID 119


>SB_43378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score =  132 bits (319), Expect = 1e-31
 Identities = 57/92 (61%), Positives = 73/92 (79%)
 Frame = +2

Query: 44  KLNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPEW 223
           KL+ EER  +L  L ++GW     RDAI KEF FK+FN+AFGFM RVAL AEKMDHHPEW
Sbjct: 8   KLDDEERNAKLPALKKAGWSEVEERDAIYKEFMFKDFNQAFGFMARVALKAEKMDHHPEW 67

Query: 224 FNVYNKLQVTLSSHDVNGLSKRDIKMASFMDK 319
           FNVYNK+Q+TLS+H+  GLS RD+ +A+F+++
Sbjct: 68  FNVYNKVQITLSTHECTGLSDRDVNLATFIEQ 99


>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1627

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = +2

Query: 41  DKLNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPE 220
           DKL      TE K LL+  +K+  N  A+  E+  +  +  F           +     E
Sbjct: 115 DKLYSAVDNTEDKKLLDVWFKLDEN--AVPPEYVLQPISSQFPAFVDPPNKEARRTAQRE 172

Query: 221 WFNVYNKLQVTLSSHDVNGLSKRD 292
           W++VY  LQ TL +     LSK +
Sbjct: 173 WWDVYLNLQNTLRAAAKKVLSKEE 196


>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +2

Query: 5   VSSTSPSKRKMADKLNQEERTTELKPLLESGWKIQSNRDAIEKEF-QFKNFNEAF-GFMT 178
           +S   P+  K A+  +    TT+L     + ++I++ RD+++K F +F+N N +F G +T
Sbjct: 355 ISDPLPAANKTANATSSATNTTDLPRRRGTRYRIRA-RDSVDKSFVKFRNPNPSFSGLLT 413


>SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)
          Length = 1001

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 8   SSTSPSKRKMADKLNQEERTTELKPLLESGWKIQSNRDA 124
           ++  P KRK   K   + R  +L+P+ ++ W  Q N ++
Sbjct: 389 TARQPMKRKPVSKRQNQLRVPQLEPMSDTEWYSQRNYES 427


>SB_47716| Best HMM Match : K_tetra (HMM E-Value=1.5e-17)
          Length = 271

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 101 KIQSNRDA-IEKEFQFKNFNEAFGFMTRVALLAEKMDHHPEWFNVYNKLQVTLSSHDVNG 277
           +I S R + ++K+   K F +  GF+  +  L  K  H PE F+   +L++    +++  
Sbjct: 64  RIFSGRQSELDKDNSGKYFIDRDGFLYILDYLRSKALHIPEKFDEIERLKMEADFYELED 123

Query: 278 LSKRDIKMAS 307
           L +R  ++ S
Sbjct: 124 LRQRLDRLTS 133


>SB_7958| Best HMM Match : NCD3G (HMM E-Value=2.9)
          Length = 257

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 161 AFGFMTRVALLAEKMDHHPEWFNVYNKLQV 250
           +FG MTR A LA K   H  W    ++L V
Sbjct: 35  SFGQMTRRAALAPKSPEHIRWLQQISQLPV 64


>SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)
          Length = 1313

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 74   LKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTRVALLAEKMDHHPE-WFNV--YNKL 244
            L  +L S W + S+RD +    Q  N +    F T VAL  E  ++  + W  V  +   
Sbjct: 1093 LNYILNSRW-VSSSRDVVALRNQLLNPSLCSEFKTFVALKGETFENDVDFWLEVQKFKAS 1151

Query: 245  QVTLSSHDVNGLS 283
              +  S+++ GLS
Sbjct: 1152 NTSTYSNNMGGLS 1164


>SB_53148| Best HMM Match : rve (HMM E-Value=4.8e-21)
          Length = 1329

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 77   KPLLESGWKIQSNRDAIEKEFQFKNFNEAFGF 172
            K + ++G +  +NR+      +FK F EA+GF
Sbjct: 1071 KVISDNGPQYSNNRNIFSTTHEFKQFAEAWGF 1102


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 224 FNVYNKLQVTLSSHDVNGLSKRDIKMASFMDKNY 325
           FN  N  ++  +S+D+ G++KRD   A   +K Y
Sbjct: 303 FNSLNSTRLENASYDIFGIAKRDSGRAVKEEKGY 336


>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 415 TLQQRFYPNHMFISLINIITPLYT 344
           TL QR Y +HM  S  N++TP  T
Sbjct: 129 TLYQRLYGSHMTRSTSNLLTPTPT 152


>SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)
          Length = 680

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 143 FKNFNEAFGFMTRVALLAE--KMDHHPEWFNVYNKLQVTL 256
           + NFN  F F+  +ALL E  ++ H P   + Y  L +T+
Sbjct: 545 YNNFNACFLFLPLMALLGEIGEVAHFPNLSSAYFWLMMTI 584


>SB_17534| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.51)
          Length = 976

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = +2

Query: 32  KMADKLNQEERTTELKPLLESGWKIQSNRDAIEKEFQFKNFNEAFGFMTR 181
           ++AD +++ E+    K  +     I++N++ +E +     F+E+F  + R
Sbjct: 633 ELADSIDKLEQKKADKQDVNKNIDIKANKEDLESKVSMNQFDESFNLLDR 682


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 250 HLQLVVYIEPLRMMIHFLS*QRDPGHESKSFIKIF 146
           H QL +YIEPL  MI+ ++ +++        +K F
Sbjct: 348 HRQLSIYIEPLTRMINKMNREKEHSGNDLKKLKTF 382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,159,349
Number of Sequences: 59808
Number of extensions: 232027
Number of successful extensions: 472
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)