Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j07r
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    89   6e-19
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    29   0.95 
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   6.7  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    25   8.9  

>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 39/72 (54%), Positives = 52/72 (72%)
 Frame = -2

Query: 748 ILKKAYENLKMTAGNFYINDKSTGSVVGQQPFGGGRMSGTNDKAGGPNYVMRWTTPQSIK 569
           +++K  + L+  AGNFYINDK TG+VVG+QPFGG R SGTNDKAG    + R+ +P+SIK
Sbjct: 474 VVRKLTDRLRNAAGNFYINDKCTGAVVGEQPFGGARASGTNDKAGSGMILSRFVSPRSIK 533

Query: 568 ETFVPLTDIDYP 533
           +TF     + YP
Sbjct: 534 DTFAYADSVLYP 545


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 721 KMTAGNFYINDKSTGSVVGQQPFGGGRMSGTNDKAGGPNYVMRWTTPQSIKETF 560
           ++ AG  +IN      +  Q PFGG +MSG  ++ G  N +  +T  +++   F
Sbjct: 442 ELEAGMVFINSTENSDI--QAPFGGIKMSGIGNELGS-NGIEMYTQIKAVHINF 492


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 117 DRKHIMLENHSDTESISTELARRTSFNISNNY 212
           +RK   LEN +DT+S+  E     S    N Y
Sbjct: 118 NRKSAQLENETDTKSLPVEANNDNSARKKNEY 149


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 101 NASEVRQETYNVRKSLGYRK 160
           NA +V +  YN R  LGY+K
Sbjct: 89  NAQDVVRSHYNARPDLGYKK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,136
Number of Sequences: 5004
Number of extensions: 50075
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)