Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j07r
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0123 - 13930138-13932471                                         29   3.0  
04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976...    28   9.3  
02_01_0035 - 220036-221419,222050-222801                               28   9.3  
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    28   9.3  

>12_02_0123 - 13930138-13932471
          Length = 777

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 745 LKKAYENLKMTAGNFYINDKSTGSVVGQQPFGGGRMSGTNDKAGG 611
           L+  +  L+  AG   +   S G++ G   FGG RM  +   AGG
Sbjct: 101 LETLHVALRFVAGGKQVKVLSLGNIYGADTFGGVRMEDSGCVAGG 145


>04_04_0808 -
           28196563-28196735,28197369-28197440,28197540-28197666,
           28198362-28198430,28198517-28198583,28198751-28198872,
           28199302-28199412,28199596-28199661,28200156-28200213,
           28200307-28200343,28200420-28200513,28200967-28201032,
           28201139-28201203,28201352-28201496,28201925-28202074,
           28202266-28202335,28202752-28202828,28202919-28202987,
           28203798-28203881,28204018-28204061,28204172-28204273,
           28204420-28204618,28204672-28204727,28204886-28204958,
           28205685-28205771,28205863-28205976,28206985-28207092,
           28207183-28207278,28207722-28207787,28208130-28208222,
           28208429-28208512,28208961-28209078,28209191-28209267,
           28209459-28209641,28210542-28210636,28210903-28211053,
           28212218-28212325,28212513-28212612,28212788-28212840,
           28214022-28214102
          Length = 1269

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = -3

Query: 255 SILLLWKYIR--LGQKGNYLKY*NLFVSLVLCLYFLYPSDFLTLYVSCLTSLAFTAYSLS 82
           S ++++ YI   LG + ++L   +LFVS    L+ LYP  F  L V  ++S +  A S S
Sbjct: 511 SYIVMFAYISFTLGDRPSHLL--SLFVSSKEILFLLYPPFFFLLKVILISSCSKAAASES 568

Query: 81  K 79
           +
Sbjct: 569 Q 569


>02_01_0035 - 220036-221419,222050-222801
          Length = 711

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -2

Query: 652 GGGRMSGTNDKAGGPNYVMRWTTPQ--SIKE-TFVPLTDIDY 536
           GGG   G +D+A   + + RW   +  SIKE T+ PL DIDY
Sbjct: 218 GGGGGGGGDDEAATESRLRRWPGDEETSIKEPTWRPL-DIDY 258


>01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,
            9739708-9739831,9739927-9740635,9741826-9742132,
            9742213-9743704
          Length = 1108

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 240  WKYIRLGQKGNYLKY*NLFVSLVLCLYFLYPSDFLTLYVSCLTSLAFTAYSLSKCKMFIS 61
            W Y R+     Y  Y N    LVL  Y LY +  LT  ++  +SL +T    S   + + 
Sbjct: 926  WNYQRMSYMILYNFYKNATFVLVLFWYVLYTAFTLTTAITEWSSLLYTVLYTSLPTIVVG 985

Query: 60   VM 55
            ++
Sbjct: 986  IL 987


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,481
Number of Sequences: 37544
Number of extensions: 279255
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)