Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j07r
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-1|AAB66116.3|  563|Caenorhabditis elegans Aldehyde dehy...   107   6e-24
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z48583-1|CAA88470.1|  389|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>AF016672-1|AAB66116.3|  563|Caenorhabditis elegans Aldehyde
           dehydrogenase protein6, isoform a protein.
          Length = 563

 Score =  107 bits (258), Expect = 6e-24
 Identities = 48/73 (65%), Positives = 58/73 (79%)
 Frame = -2

Query: 745 LKKAYENLKMTAGNFYINDKSTGSVVGQQPFGGGRMSGTNDKAGGPNYVMRWTTPQSIKE 566
           L +A + L+   GN Y+NDKSTGS+VGQQPFGG R+SGTNDKAGGP+Y +RWT+P +IKE
Sbjct: 490 LYRARDVLRDAVGNMYLNDKSTGSIVGQQPFGGSRLSGTNDKAGGPHYGLRWTSPLTIKE 549

Query: 565 TFVPLTDIDYPYM 527
           T V LTD  YP M
Sbjct: 550 TSVSLTDWKYPSM 562


>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
           protein C06A5.1 protein.
          Length = 1932

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 174 VLCLYFLYPSDFLTLYVSCLTSLAFTAYSLSKC 76
           V+C    YP + L L++S +TSLA     L KC
Sbjct: 164 VICNSRSYPDNILELFISIITSLARQQPILDKC 196


>Z48583-1|CAA88470.1|  389|Caenorhabditis elegans Hypothetical
           protein F54B3.2 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = -3

Query: 375 VYFEYYLIIHVVKCRYLSKLM*FFENELMLITSFMLWHDCSILL---LWKYIRLGQKGNY 205
           V FE++    V K +   + M    N+    +  + + + +I L    W+Y +LG++   
Sbjct: 183 VQFEFHRRSVVSKIQKTIEFMLKLNNQTSTYSQLIPYWNPTIFLPPASWQYRKLGEEKEK 242

Query: 204 LKY*NLFVSLVLCLYFLYPSDFLTLYVSC 118
           L+  N+ +S VL +  + P  F  + VSC
Sbjct: 243 LEAENMSISWVLVVSVM-PMIFFGVVVSC 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,339,199
Number of Sequences: 27780
Number of extensions: 274648
Number of successful extensions: 558
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)