Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j07f
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...   109   3e-25
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    36   0.006
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   2.8  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    26   5.0  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   6.6  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   6.6  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   8.7  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   8.7  

>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score =  109 bits (262), Expect = 3e-25
 Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
 Frame = +2

Query: 158 QFQDGSIHNEPVLGYRAGSRERQDLIEELKRT-ASVIEDVPIVIAGKNITEGEPRYQVMP 334
           +F+  +I NEP   Y   S +R+ +++  K   A +   +P++I GK +       Q  P
Sbjct: 6   EFKLPAIKNEPPKHYGPNSADREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGEQRCP 65

Query: 335 HDHSKKIAKYYYASEKTIEKAIQASVDAQTRWDRTPLTERVKIWQTAAELMAGAYRQSLN 514
            +H K +A+Y+ A  K +E AI+A++  +  W+  P  +R  I+  AA L++  YR  L 
Sbjct: 66  FEHKKVVARYHRAGAKHVEDAIEAALRGKKVWESLPFADRSAIFLKAAHLISTKYRYKLM 125

Query: 515 AATILGQSKSVIQAEIDAAAELIDFFRFNVHF 610
           AAT++GQ K++ QAEIDA  E+IDF RFN  +
Sbjct: 126 AATMIGQGKNIWQAEIDAGMEIIDFLRFNTKY 157


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = +2

Query: 353 IAKYYYASEKTIEKAIQASVDAQTRWDRTPLTERVKIWQTAAELMAGAYRQSLNAATILG 532
           IAK Y A EK I+ A++++ +A   W + P +E+ ++    AEL    +  +L A   + 
Sbjct: 47  IAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEKGELLMKLAEL-TEKHADTLAAIEAMD 105

Query: 533 QSKSVI---QAEIDAAAELIDF 589
             K ++   + ++D    L+ +
Sbjct: 106 SGKPLVSNARGDVDGTIALLRY 127


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 113 VRSLERTLSSV--VDLPQFQDGSIHNEPVLGYRA 208
           V  + ++LS++   DLP F++  IH+ PV  YR+
Sbjct: 5   VDQISKSLSTLGLQDLPVFREADIHHNPVDVYRS 38


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 260 VIEDVPIVIAGKNITEGEPRYQVMPHD-HSKKIAKYYYASEKT 385
           V E++PIV+ G  +   E + +      H KK  +YY  S K+
Sbjct: 110 VCENIPIVLCGNKVDVKERKVKAKAITFHRKKNLQYYDISAKS 152


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 218 ERQDL--IEELKRTASVIEDVPIVIAGKNITEGE 313
           +RQD+  + ELKR  S++ED+ I  AG +   GE
Sbjct: 147 QRQDVFTVHELKRIESILEDL-INAAGASHKHGE 179


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 382 FFTGIVIFSYLF*VIMGHHLISWLAFCNIF 293
           F+ G ++  Y   ++M    +S+  FCN+F
Sbjct: 121 FYAGYLVAQYPAAILMQKCRLSYFIFCNVF 150


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 8   LSLSRGLGPTYCQLIRYSVLTRVSVMLTIWARI 106
           L+LS G+ P   +L++   +    V++ IWARI
Sbjct: 524 LALSIGIFPYVLKLLQSPAIELKPVLVFIWARI 556


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 313 LAFCNIFSGNYNWYVFNY 260
           L  C I   N++W  FNY
Sbjct: 482 LTICKILLNNFDWNFFNY 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,676
Number of Sequences: 5004
Number of extensions: 43435
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)