Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j07f
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0811 + 21438848-21439001,21439469-21439662,21439769-214398... 29 2.9
06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261 29 2.9
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735... 29 2.9
07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026 29 3.9
01_01_0921 + 7275019-7275363,7275422-7276147,7276289-7276346,727... 29 3.9
10_02_0089 - 5138048-5138561,5138864-5139105,5139712-5140079,514... 28 5.1
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661... 28 6.8
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 27 8.9
08_01_0178 - 1509100-1511214 27 8.9
04_03_0914 + 20788103-20789642,20790036-20790529 27 8.9
>08_02_0811 +
21438848-21439001,21439469-21439662,21439769-21439897,
21441552-21441671,21441751-21441887,21441969-21442124,
21442565-21442943,21443041-21443157,21443225-21443371
Length = 510
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 374 SEKTIEKAIQASVDAQTRWDRTPLTERVKIWQTAAELM 487
+++ + K ++ + AQ W RTPL +R ++ AA ++
Sbjct: 54 TQEEVNKVMETAKVAQKAWARTPLWKRAELLHKAAAIL 91
>06_03_0145 - 17226442-17226540,17226740-17226844,17227914-17228261
Length = 183
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 425 RWDRTPLTERVKIWQTAAELMAGAYRQSLNAATILGQSKSVIQAEIDAAAELI 583
R R+PL R AA L AGA ++ + A G S + ++ DAAA+L+
Sbjct: 32 RSSRSPLRRRPAALGCAASLAAGAAKEIADEAGFFGSSGASLR---DAAADLV 81
>02_04_0656 -
24769069-24770814,24771552-24771608,24773307-24773582,
24773675-24773965
Length = 789
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +2
Query: 170 GSIHNEPVLGYRAGSRERQDLIEELKRTASVIEDVPIVIAGKNITEGE 313
G++H E + YR + +R+D+ + L+R V+ G + ++G+
Sbjct: 635 GTVHGERRVAYRLDAADREDIRDGLRRALRVLVAAGAAEVGTHRSDGQ 682
>07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026
Length = 453
Score = 28.7 bits (61), Expect = 3.9
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Frame = +2
Query: 56 YSVLTRVSVMLTIWARIGRVRSLERTLSSVVDLP------QFQ-DGSIHNEPVLGYRAGS 214
Y V+ R+S + + + GR+RS + +L V LP FQ D + + P L + G+
Sbjct: 206 YRVVDRISNAVLLISDFGRLRSEQASLVKDVILPYAHRINSFQGDVGVESRPSLLFFMGN 265
Query: 215 RERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHDHSKK 352
R R++ + V+E+ VI E R HS K
Sbjct: 266 RYRKEGGKVRDTLFQVLENEADVIIKHGAQSRESRRMATRGMHSSK 311
>01_01_0921 +
7275019-7275363,7275422-7276147,7276289-7276346,
7276773-7276972
Length = 442
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +2
Query: 341 HSKKIAKYYYASEKTIEKAIQASVDAQTRWDRTPLTERVKIWQTAAELMAGAYRQSLNAA 520
H ++A+ AS I AIQ++V+AQT D LT A ++ + + AA
Sbjct: 255 HCVEMAQAIGASHDQILGAIQSAVNAQTSGDIMALTAGAATALRGAAMLRARLHKEIQAA 314
Query: 521 TILG 532
+ G
Sbjct: 315 ALPG 318
>10_02_0089 -
5138048-5138561,5138864-5139105,5139712-5140079,
5140862-5140943
Length = 401
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 296 NITEGEPRYQVMPHDHSKKIAKYYYASEKTIEKAI 400
N TEG + V+PHD + A +Y+ K IE+ I
Sbjct: 128 NRTEGADHFFVVPHDFA---ACFYFQEAKAIERGI 159
>03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,
6617328-6617469,6617567-6617938,6618056-6618187,
6618907-6619035,6619125-6621188
Length = 1176
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +2
Query: 179 HNEPVLGYRAGSRERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHD 340
H E S ER + IEE T +V + AGK E +P+ PH+
Sbjct: 901 HQESSSSDSEESPERVNSIEEAPSTKTVSRSLLEACAGKGFREYQPKAMHRPHN 954
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +2
Query: 227 DLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHDHSKKIAKYYYASEKTIEKAIQA 406
DL+ + R E P V+AG + T G+ Q P S ++AK +K + ++Q+
Sbjct: 3802 DLVGMMDRVQPSSEATPGVVAGISATPGD--NQPSPARESAEVAKEGTGQQKADQASVQS 3859
Query: 407 SVD 415
D
Sbjct: 3860 PQD 3862
>08_01_0178 - 1509100-1511214
Length = 704
Score = 27.5 bits (58), Expect = 8.9
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Frame = +2
Query: 203 RAGSRERQDLIEELKRTASVIEDVPIVIAGKNITE---GEPRYQVMPHDHSKKIAKYYYA 373
RA S + +L + +R V DVP AG+++TE Y+ +A +
Sbjct: 457 RAASVDVGELYADEERRFLVFVDVPAAGAGEDVTELIKVSCTYRDTASRQQMVVAGEHAV 516
Query: 374 SEKTIEKA--IQASVDAQTRWDRTPLTERVKIWQTAAELMAGAYRQSL 511
++ +E A + S++ + R TE + Q AAE A A +++
Sbjct: 517 VQRPVEVATNTEPSIEVERERFRVEATEDIAAAQEAAERGAHAAAKAI 564
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 416 AQTRWDR-TPLTERVKIWQTAAELMAGAYRQSLNAATI 526
A+ WD+ T L R+ W+ + +L AG Y + L+ + +
Sbjct: 163 AKLGWDKVTGLNRRIISWKNSKDLAAGVYCKELDPSGV 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,303,445
Number of Sequences: 37544
Number of extensions: 289068
Number of successful extensions: 772
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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