Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j07f
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)                       87   1e-17
SB_4201| Best HMM Match : HEAT (HMM E-Value=0.54)                      26   2.8  
SB_9147| Best HMM Match : Sushi (HMM E-Value=0)                        29   3.0  
SB_19189| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.1)           29   4.0  
SB_39145| Best HMM Match : DUF931 (HMM E-Value=3.7)                    28   5.2  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    27   9.1  
SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)             27   9.1  
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 523

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 52/143 (36%), Positives = 75/143 (52%)
 Frame = +2

Query: 182 NEPVLGYRAGSRERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHDHSKKIAK 361
           NEP+    A    R  +   +K+  S   ++P++  G+ +  G  +YQV P DHS KIAK
Sbjct: 29  NEPLTDVGAN---RSKIDAAIKKVQSETVELPVLCGGEKVYTGNVKYQVSPFDHSNKIAK 85

Query: 362 YYYASEKTIEKAIQASVDAQTRWDRTPLTERVKIWQTAAELMAGAYRQSLNAATILGQSK 541
           Y+ A E  +++ I+ +V A+  WDRTP  ER        EL                Q K
Sbjct: 86  YHVADEALVKETIKRAVAARKAWDRTPFEERK---HAGVELCN-------------FQGK 129

Query: 542 SVIQAEIDAAAELIDFFRFNVHF 610
           +V +A+IDA AEL DF+RF VH+
Sbjct: 130 TVFEADIDAIAELADFYRFAVHY 152


>SB_4201| Best HMM Match : HEAT (HMM E-Value=0.54)
          Length = 399

 Score = 26.2 bits (55), Expect(2) = 2.8
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +2

Query: 203 RAGSRERQDLIEELKRTASVIEDVPIVIAGK--NITEGEPRYQVMP-HDHSKK 352
           R  SRER++ IE +KRT  ++    IVI+G    + +GE   ++MP  D SK+
Sbjct: 114 REKSRERREPIEWIKRTFFLLAVELIVISGPLCRMRQGE---KIMPLEDLSKQ 163



 Score = 21.4 bits (43), Expect(2) = 2.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 377 EKTIEKAIQASVDAQTRWDRTPLTERVKIWQTAAE 481
           EKTI K+ +A++ +++R  R     + K  + AAE
Sbjct: 198 EKTIGKSSKANLKSKSRMMREREEMKAKEAEAAAE 232


>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1656

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +1

Query: 169  WEHP*RACVGLSCRKPGTPRPN*GAETNR-FSN*RRTNC---NCRKKYYRRRATISG 327
            W      C  L C  PGTPR +    TN  F+N    +C   +  + Y  RR T++G
Sbjct: 1296 WSGTQPRCYLLDCGDPGTPRNSLKLNTNHTFNNYVFYHCLDGHAHRGYSYRRCTVTG 1352


>SB_19189| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.1)
          Length = 351

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 113 VRSLERTLSSVVDLPQFQDGSIHNEPVLGYR 205
           V  +E   SS+V + + +DGSIH E VLG R
Sbjct: 32  VGKVEMLSSSMVAVGEKEDGSIHLEKVLGTR 62


>SB_39145| Best HMM Match : DUF931 (HMM E-Value=3.7)
          Length = 153

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 113 VRSLERTLSSVVDLPQFQDGSIHNEPVLGYR 205
           V  +E   SS+V + + +DGSIH E VLG R
Sbjct: 32  VGKVEMLSSSMVAVGKKEDGSIHLEKVLGTR 62



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 104 IGRVRSLERTLSSVVDLPQFQDGSIHNEPVLGYR 205
           +G+V  L    SS+V + + +DGSIH E VLG R
Sbjct: 67  VGKVGMLS---SSMVAVGEKEDGSIHLEKVLGTR 97


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 187  ACVGLSCRKPGTPRPN*GAETNRFSN*RRTNCNC 288
            A VG++C  PG P  +     N F N +   C C
Sbjct: 1544 AYVGVNCELPGCPGRDGNCNGNGFCNLKLQKCEC 1577


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
 Frame = +2

Query: 50   IRYSVLTRVSVMLTIWARIGR---------VRSLERTLSSVVDLPQFQDGSIHNEPVLGY 202
            + +  L+ V +  T+WA++GR            L++  S++    + +        VLG 
Sbjct: 951  VNWEKLSGVGLENTVWAQLGRNERLDNVIEFMELDQNFSTIQQTKEKEPKKPEKPQVLGP 1010

Query: 203  RAGSRERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHDHSKKIAKYYYASE 379
            +  +     L+  LK++A  I++  + +    + E   R  +M    S ++ KY Y ++
Sbjct: 1011 KK-AYNISILLGHLKKSAEEIKEAIMQMDDSKLNEAHLRQLLMYAPDSTELLKYKYFAD 1068


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +2

Query: 278 IVIAGKNITEGEPRYQVMPHDHSKKIAKYYYASEKTIEKAIQASVDAQTRWDR 436
           +++  K + E EP+Y+ +  DH+  +    +  E   E A +   D + +W++
Sbjct: 380 LMMLEKELAEMEPKYRAVKEDHN-ALRDNQFLGEADQEAADEDMHDIEAQWEK 431


>SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)
          Length = 906

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 32  PTYCQLIRYSVLTRVSVMLTIWARIGRVRSLER 130
           P +CQLI     T V++ +T W+ +G V  L++
Sbjct: 261 PWFCQLIFVIYRTLVALYVTTWSVLGGVMRLDQ 293


>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 302 TEGEPRYQVMPHDHSKKIAKYYYASEKTIE 391
           TE  P  + +PH+  K+ A YY   E  I+
Sbjct: 603 TEATPNIEAVPHESPKEPATYYRPKEAGID 632


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,620,332
Number of Sequences: 59808
Number of extensions: 335498
Number of successful extensions: 819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)