Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j06r
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    27   2.0  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    25   7.9  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   7.9  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 30  FLFKIK*K*NQPLKLSYLKEINAKIIINTHEMNQHKIYINLENIYHVEYKN 182
           F F+I       LKL+  +EIN  II  THE+ Q +I     N + +  +N
Sbjct: 58  FSFEIDSTYAHTLKLAENQEINLSIIDCTHEIEQLEIEPVTSNDWEIAERN 108


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 468 IISHGLCSSGIFWLANINYERXHSRSLYINRGMINFI 358
           ++S GL SSGI  L  I          YI  GM++ +
Sbjct: 105 LVSAGLISSGIMTLIQIARVHIPKTKYYIGTGMLSVL 141


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 108  INTHEMNQHKIYINLENIYHVEYKNISINYN 200
            +NT    + K   NL NI++ EY N SI  N
Sbjct: 1201 LNTSRGFETKYLYNLMNIWNPEYTNDSIKSN 1231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,682
Number of Sequences: 5004
Number of extensions: 27522
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)