Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j04f
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   5.3  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   7.0  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    25   7.0  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   9.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.2  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   9.2  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   9.2  
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    25   9.2  

>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 249 VTANLLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVEN 377
           +++N +S A     +T G+ +  +    +SE+  +SD NF+ N
Sbjct: 48  LSSNAVSEASLDKESTVGNLENQKNRSYSSEIYLHSDTNFLSN 90


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/47 (23%), Positives = 27/47 (57%)
 Frame = +3

Query: 267 SAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVENLQKNDLHKQE 407
           S +Q +++    HE++HE+  + +E+   S     E+ +++ L+ +E
Sbjct: 143 SQSQNVDSGKTNHEEIHESRHLQTEIEEPS--GLEESSEESVLYSEE 187


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 459 CKQATPVLESE 491
           CKQATPVLE E
Sbjct: 406 CKQATPVLEEE 416


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 19/77 (24%), Positives = 29/77 (37%)
 Frame = +3

Query: 279 AINNATAGHEKLHEAMQMASELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQ 458
           AINN+T    K H A+  +   ++ S   F  + Q +  H      + P  R        
Sbjct: 540 AINNSTEDLSKKHPALHSSRPSDSRSRSKFGNDYQSHSKHNLFRKNSFPKRRRLSNSDTP 599

Query: 459 CKQATPVLESEAIQKAA 509
            +  TP  E E +   A
Sbjct: 600 SETTTPNNEQEQVSNQA 616


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 5    VRKQFLKNNWYLQILRNFDIHFFSVIDIFVTNFNLHV 115
            + ++F  N+  +Q++   D H   V D  + NFN+ V
Sbjct: 1621 ISEEFTINSAGIQLILISDAHCLPVFDFTIENFNVLV 1657


>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1021

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = +3

Query: 231  GQQGDSV-TANLLSAAQAINNATAGHEK-LHEAMQMASELNNYSDPNFVENLQKNDLHKQ 404
            G++G  V TA  +SA +      A  +  L E+++    + + +DP  +  + K    K+
Sbjct: 771  GKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDATDPQTILAILKQKKAKK 830

Query: 405  EVLAAEPVIRHHCRCMQQCKQATPVLESE 491
            +  A E  I             TP  ESE
Sbjct: 831  KHAAREMEISSQIPSNDSSNVQTPTAESE 859


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 300 GHEKLHEAMQMASELNNYSDPNFVENLQKNDLHK 401
           GH  L EA +      +  + N + +L +NDLH+
Sbjct: 537 GHMSLEEARKKLLNEKDMGELNMIIDLIRNDLHQ 570


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 312 LHEAMQMASELNNYSDPN 365
           LH+A+ + +E+ N+ DPN
Sbjct: 62  LHDAVTIINEMRNWRDPN 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,925
Number of Sequences: 5004
Number of extensions: 44372
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)