Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j04f
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1296| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_58243| Best HMM Match : DUF584 (HMM E-Value=1.5) 30 1.4
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18) 30 1.4
SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018) 29 4.2
SB_25488| Best HMM Match : Death (HMM E-Value=1.4e-12) 28 5.6
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_12199| Best HMM Match : FF (HMM E-Value=4.6) 28 5.6
SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07) 27 9.7
>SB_1296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 954
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 261 LLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVENL 380
LL A + N TA H++L A A +LN+Y D N ENL
Sbjct: 445 LLGAWEQANVLTADHKRLQAA---AEQLNSYRDSNLDENL 481
>SB_58243| Best HMM Match : DUF584 (HMM E-Value=1.5)
Length = 1308
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +3
Query: 312 LHEAMQMASELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESE 491
L E + A+ELNNY + N NL + K+ A+ V ++H P +
Sbjct: 1009 LCETIAEAAELNNYRNSNSAPNLITEKVMKESAQLAKRVSKNHL-------DVRPTVSRT 1061
Query: 492 AIQKAAQMQPTVDKM 536
+A + P+V++M
Sbjct: 1062 KSTPSALLMPSVERM 1076
>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
Length = 736
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 261 LLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVENL 380
LL A + N TA H++L A A +LN+Y D N ENL
Sbjct: 598 LLGAWEQANVLTADHKRLLAA---AEQLNSYRDSNLDENL 634
>SB_38162| Best HMM Match : zf-CCCH (HMM E-Value=0.018)
Length = 541
Score = 28.7 bits (61), Expect = 4.2
Identities = 25/103 (24%), Positives = 39/103 (37%)
Frame = +3
Query: 177 RIEQLEAKLGLSPEISIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAMQMASELNNYS 356
RI EA +S + D A L Q+ E L ++ EL
Sbjct: 179 RIAYTEAHRSVSKHVPPSNLTYDPTAATTLMRIQSFEEKQQQKELL---LRQHRELQQQL 235
Query: 357 DPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLE 485
+ +EN D + +E + EPV+R+ Q+ PV+E
Sbjct: 236 EREELENANIKDGNNEEAVMEEPVLRNPELSADSGIQSEPVIE 278
>SB_25488| Best HMM Match : Death (HMM E-Value=1.4e-12)
Length = 387
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/71 (23%), Positives = 26/71 (36%)
Frame = +3
Query: 246 SVTANLLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVENLQKNDLHKQEVLAAEP 425
S T ++ NN E MA + V+N+Q ND Q E
Sbjct: 208 SSTPRPVTVENNTNNPQVQFIPTTEENNMADRAPEVKATDSVKNIQNNDFTAQNGEPGEK 267
Query: 426 VIRHHCRCMQQ 458
+++H CR +
Sbjct: 268 MVKHMCRAAHE 278
>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = -2
Query: 593 LNSMRYCISFRLYFC-SCSVHLVYSG-LH--LS-SFLYGLRLQNWCCLFTLLH 450
L S+RYC+S +++C S +VH S +H LS + Y L + CC+ +H
Sbjct: 559 LLSVRYCLSVTVHYCLSATVHYCLSATVHYCLSVTVHYCLSVTVHCCMSVTVH 611
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 596 LLNSMRYCISFRLYFC-SCSVHLVYSGLHLSSFLYGLRLQNWCCLFTLLH 450
LL S+RYC+S ++ C S +VH S + Y L + CCL +H
Sbjct: 334 LLLSVRYCLSVTVHCCLSVTVHYCLS----VTVHYCLSVTVHCCLSVTVH 379
>SB_12199| Best HMM Match : FF (HMM E-Value=4.6)
Length = 193
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 276 QAINNATAGHEKLHEAMQMASELNNYSDPNFVENLQKN 389
Q++ N + K E + SE SD NF+E L+KN
Sbjct: 64 QSLKNLFTLYGKAKETSKQLSEYKMGSDSNFLERLRKN 101
>SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 27.5 bits (58), Expect = 9.7
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +3
Query: 168 LQSRIEQLEAKLGLSPEISIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAMQMASELN 347
+Q++++QLE K + + S DG Q + T AQA NNA A +L E + E+
Sbjct: 1 MQAKLQQLEEK---NLQSSCDGLQEEKATFEAQITAQAKNNA-AKDARLAE---LKKEIE 53
Query: 348 NYSDPNFVENLQKNDLHKQEVL 413
+L N H ++
Sbjct: 54 QAKTRQHAVSLTANKTHPHTII 75
>SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07)
Length = 379
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 250 TESPC*PSIDISGDKPNLASSCSILLC 170
T+S C +D+ G PN S+C + +C
Sbjct: 145 TKSLCSRELDLCGPCPNTTSACRVKIC 171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,682,195
Number of Sequences: 59808
Number of extensions: 310438
Number of successful extensions: 712
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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