Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j04f
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024765-1|AAF60529.2|  300|Caenorhabditis elegans Prion-like-(q...    30   1.6  
Z82088-3|CAF32230.1|  978|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82088-1|CAB05000.2|  901|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81490-5|CAF32231.1|  978|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81490-3|CAB04015.2|  901|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AJ303082-1|CAC19896.1|  901|Caenorhabditis elegans PMR1 protein ...    29   3.7  
AJ303081-1|CAC19895.1|  901|Caenorhabditis elegans PMR1 protein ...    29   3.7  
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U00047-1|AAA50687.2|  145|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like ...    28   6.5  
AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine r...    28   6.5  
AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to SU...    28   6.5  
AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    27   8.6  
AL021474-3|CAD54163.1|  519|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AC024765-1|AAF60529.2|  300|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 82
           protein.
          Length = 300

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +3

Query: 348 NYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESEAIQKAAQMQPTV 527
           ++SD + VENL+      Q++ A +P      R     ++  P    EA+++  Q QPT 
Sbjct: 215 HWSDVDNVENLENQATAAQQIPAKKP------RWNSVEQEPEPEAPLEAVEQQQQKQPTT 268

Query: 528 DKMH 539
           D  H
Sbjct: 269 DGQH 272


>Z82088-3|CAF32230.1|  978|Caenorhabditis elegans Hypothetical protein
            ZK256.1c protein.
          Length = 978

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 20   LKNNWYLQILRNFDIHFFSVIDIFVTNFNLHVLYFLLRSKNINNGSYS 163
            L++ +  + L  FD+ F + I   V  FN    YF LRSK++N+   S
Sbjct: 927  LQHIFQTEALSLFDLIFLTTITSSVFIFNETRKYFSLRSKSLNHDPLS 974


>Z82088-1|CAB05000.2|  901|Caenorhabditis elegans Hypothetical
           protein ZK256.1a protein.
          Length = 901

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 20  LKNNWYLQILRNFDIHFFSVIDIFVTNFNLHVLYFLLRSKNINNGSYS 163
           L++ +  + L  FD+ F + I   V  FN    YF LRSK++N+   S
Sbjct: 850 LQHIFQTEALSLFDLIFLTTITSSVFIFNETRKYFSLRSKSLNHDPLS 897


>Z81490-5|CAF32231.1|  978|Caenorhabditis elegans Hypothetical protein
            ZK256.1c protein.
          Length = 978

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 20   LKNNWYLQILRNFDIHFFSVIDIFVTNFNLHVLYFLLRSKNINNGSYS 163
            L++ +  + L  FD+ F + I   V  FN    YF LRSK++N+   S
Sbjct: 927  LQHIFQTEALSLFDLIFLTTITSSVFIFNETRKYFSLRSKSLNHDPLS 974


>Z81490-3|CAB04015.2|  901|Caenorhabditis elegans Hypothetical
           protein ZK256.1a protein.
          Length = 901

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 20  LKNNWYLQILRNFDIHFFSVIDIFVTNFNLHVLYFLLRSKNINNGSYS 163
           L++ +  + L  FD+ F + I   V  FN    YF LRSK++N+   S
Sbjct: 850 LQHIFQTEALSLFDLIFLTTITSSVFIFNETRKYFSLRSKSLNHDPLS 897


>AJ303082-1|CAC19896.1|  901|Caenorhabditis elegans PMR1 protein
           protein.
          Length = 901

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 20  LKNNWYLQILRNFDIHFFSVIDIFVTNFNLHVLYFLLRSKNINNGSYS 163
           L++ +  + L  FD+ F + I   V  FN    YF LRSK++N+   S
Sbjct: 850 LQHIFQTEALSLFDLIFLTTITSSVFIFNETRKYFSLRSKSLNHDPLS 897


>AJ303081-1|CAC19895.1|  901|Caenorhabditis elegans PMR1 protein
           protein.
          Length = 901

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 20  LKNNWYLQILRNFDIHFFSVIDIFVTNFNLHVLYFLLRSKNINNGSYS 163
           L++ +  + L  FD+ F + I   V  FN    YF LRSK++N+   S
Sbjct: 850 LQHIFQTEALSLFDLIFLTTITSSVFIFNETRKYFSLRSKSLNHDPLS 897


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +3

Query: 246 SVTANLLSAAQAINNATAGHEKLHEAMQMASE-LNNYSDPNFVENLQKNDLHKQEVLAAE 422
           ++ ANL    + +N      +K+ +   M SE + NYS PNF+ NLQ   L + ++ A  
Sbjct: 510 ALNANLTVFDKILNFWEVLDKKIQDKTVMHSEKVENYS-PNFIRNLQL--LSQLQLSADV 566

Query: 423 PVIRHHCRCMQQCKQATPVLE 485
              R    C+  C +  P ++
Sbjct: 567 KRTRALSTCLFACVEQIPYIK 587


>U00047-1|AAA50687.2|  145|Caenorhabditis elegans Hypothetical
           protein ZK418.3 protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 554 FCSCSVHLVYSGLHLSSFLYGLRLQNWCCLFTLLHTATVM 435
           F +C VHL   G+ L    YG   +N   LF  L T  ++
Sbjct: 26  FSACLVHLGSEGVRLGLGFYGNLAENMSALFGFLITTIII 65


>U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like
           protease protein 1 protein.
          Length = 697

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 336 SELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESEAIQ 500
           S L+NY+  N  +  ++N   K EVL   PV RH  +     ++   +++ + I+
Sbjct: 237 SSLSNYTSNNVRDYWRRNSAKKPEVLRRVPV-RHQFKHSTSVRKMNTIIDLKKIK 290


>AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine
           receptor, class z protein79 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 620 GRSASFG*LLNSMRYCISFRLYFCSCSVHLVYSGLHLSSFL 498
           GR   FG  +  +  CI F LY C+ + H +   L    FL
Sbjct: 92  GRRFFFGFFVIVVAMCIVFTLYLCTAAFHFITFLLAAQRFL 132


>AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to
           SUMO-1-specific protease protein.
          Length = 697

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 336 SELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESEAIQ 500
           S L+NY+  N  +  ++N   K EVL   PV RH  +     ++   +++ + I+
Sbjct: 237 SSLSNYTSNNVRDYWRRNSAKKPEVLRRVPV-RHQFKHSTSVRKMNTIIDLKKIK 290


>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 17  FLKNNWYLQILRNFDIHFFSVIDIFVTNFNLHVLYFLLRSKNINNGSYSSFTK*N 181
           F KN ++++ +R F+  + S   I    F    L+F L   N+    +S+F K N
Sbjct: 311 FKKNYYHIRKIRFFNFFYISK-KILTKKFFKKNLFFFLIFNNLEKSIFSNFKKSN 364


>AL021474-3|CAD54163.1|  519|Caenorhabditis elegans Hypothetical
           protein Y32F6A.4 protein.
          Length = 519

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 80  IDIFVTNFNLHVLYFLLRSKNINN 151
           I I VT F + V+Y LL SKNI N
Sbjct: 146 ICIDVTQFMISVVYLLLASKNIMN 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,395,551
Number of Sequences: 27780
Number of extensions: 254210
Number of successful extensions: 740
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)