Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j03r
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    30   0.29 
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.5  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    26   6.2  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.2  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.2  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   8.2  
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    25   8.2  

>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 527 SRKIMVKDIFVKQASPEPVVKKFMCGTLETMKPNWCL 417
           SR  + KDI  K+ + E + KK+    +   K  WCL
Sbjct: 204 SRSAIQKDIKAKERAVEHIAKKYYSSKITKEKVRWCL 240


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 624 FIQCKNSKILKMLLKRFIHSCLQLYEY*TLFRITKNYGKRHICKTSLSGTGCEEIYVRN 448
           +++C + K LK+ LKR  H     YE  +L R+ +     H+       T  E  Y RN
Sbjct: 198 YVRCDSVKNLKVALKRVKHI---FYEQVSLIRLERTQPILHLMNFDDYSTSYELFYDRN 253


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -3

Query: 350 RVTLVNRCQFVFQISYKL*HADAILMYENQIKIML*PAITQNREMILFMQKMKEKL*DLK 171
           R T + RC FV +  Y+L  + +++   +Q    L    +Q   +IL    MK  L D+ 
Sbjct: 314 RATSIGRCPFVPETKYRLSTSKSLVAKNDQ---QLLQRQSQEPSLILRANSMKASLPDIS 370

Query: 170 FT 165
            T
Sbjct: 371 NT 372


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 283 ASACYNLYEIWKTNW 327
           ++AC N ++I++TNW
Sbjct: 106 STACINFFDIYQTNW 120


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 560 FNCMNIKHCLGSRKIMVKDIFV 495
           +N  +I+ C GSRK+ +  I V
Sbjct: 350 YNFEHIRQCFGSRKLAISSILV 371


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = +1

Query: 307  EIWKTNWQRFTKVTLQTYCNNIFTGISQCVLKAINRPKHQLGFIVSRVPHINFFTTGSGE 486
            ++WK+N  + +   ++ YC +    + Q    A  RP   +GF V+    +  F     +
Sbjct: 1148 QMWKSNLCQESVALVERYCVHTLEYVFQKTSSANERP--DIGFWVANTHALLAFVYTKQQ 1205

Query: 487  ACFTNMSFTII 519
            A   + +FT++
Sbjct: 1206 AFKHSSAFTLL 1216


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = +1

Query: 388 QCVLKAINRPKHQLGFIVSRVPHINFFTTGSGEACFTNMSFTIIFRDPKQCLIFIQLKT 564
           QC+L  +     + G  ++++  +N F     +    N  +T +  DPK     + +KT
Sbjct: 87  QCLLN-LQEVLTEAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPARSCVAVKT 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,291
Number of Sequences: 5004
Number of extensions: 57081
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)