Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j03r
         (718 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC023569-1|AAH23569.1|  443|Homo sapiens UPF3 regulator of nonse...    31   5.4  
BC008694-1|AAH08694.1|  151|Homo sapiens UPF3A protein protein.        31   5.4  
AY013250-1|AAG48510.1|  476|Homo sapiens hUPF3A protein.               31   5.4  
AL160396-6|CAM22288.1|  443|Homo sapiens UPF3 regulator of nonse...    31   5.4  
AL160396-5|CAI15816.1|  476|Homo sapiens UPF3 regulator of nonse...    31   5.4  
AF318575-1|AAG60690.1|  452|Homo sapiens UPF3 protein.                 31   5.4  

>BC023569-1|AAH23569.1|  443|Homo sapiens UPF3 regulator of nonsense
           transcripts homolog A (yeast) protein.
          Length = 443

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 561 LQLYEY*TLFRITKNYGKRHICKTSLSGTGCEE 463
           LQLY+    FR  +  G R ICK   SGTG E+
Sbjct: 406 LQLYDPGARFRARECGGNRRICKAEGSGTGPEK 438


>BC008694-1|AAH08694.1|  151|Homo sapiens UPF3A protein protein.
          Length = 151

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 561 LQLYEY*TLFRITKNYGKRHICKTSLSGTGCEE 463
           LQLY+    FR  +  G R ICK   SGTG E+
Sbjct: 114 LQLYDPGARFRARECGGNRRICKAEGSGTGPEK 146


>AY013250-1|AAG48510.1|  476|Homo sapiens hUPF3A protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 561 LQLYEY*TLFRITKNYGKRHICKTSLSGTGCEE 463
           LQLY+    FR  +  G R ICK   SGTG E+
Sbjct: 439 LQLYDPGARFRARECGGNRRICKAEGSGTGPEK 471


>AL160396-6|CAM22288.1|  443|Homo sapiens UPF3 regulator of nonsense
           transcripts homolog A (yeast) protein.
          Length = 443

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 561 LQLYEY*TLFRITKNYGKRHICKTSLSGTGCEE 463
           LQLY+    FR  +  G R ICK   SGTG E+
Sbjct: 406 LQLYDPGARFRARECGGNRRICKAEGSGTGPEK 438


>AL160396-5|CAI15816.1|  476|Homo sapiens UPF3 regulator of nonsense
           transcripts homolog A (yeast) protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 561 LQLYEY*TLFRITKNYGKRHICKTSLSGTGCEE 463
           LQLY+    FR  +  G R ICK   SGTG E+
Sbjct: 439 LQLYDPGARFRARECGGNRRICKAEGSGTGPEK 471


>AF318575-1|AAG60690.1|  452|Homo sapiens UPF3 protein.
          Length = 452

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 561 LQLYEY*TLFRITKNYGKRHICKTSLSGTGCEE 463
           LQLY+    FR  +  G R ICK   SGTG E+
Sbjct: 415 LQLYDPGARFRARECGGNRRICKAEGSGTGPEK 447


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,296,788
Number of Sequences: 237096
Number of extensions: 1744754
Number of successful extensions: 2465
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2465
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)