Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j03r
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.7 protein.
          Length = 767

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +2

Query: 50  LSKYMCSFHFKQTK*VDSSDLTQSKLLHRPKFLKRIPCA*ILNLITFLSFSA*IVSFRDS 229
           L  ++C FH +  K  +   + ++KL    + LK+     + N + F   ++ IV  RD+
Sbjct: 47  LLSFLCKFHDEYLKVSNELKMNENKLARMVELLKKNDLDQVRNSLDFEEINSMIVKLRDT 106


>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = -2

Query: 555 LYEY*--TLFRITKNY--GKRHICKTSLSGTGC 469
           LYEY   +LFR T  Y  G RH+  T ++ TGC
Sbjct: 214 LYEYQLESLFRHTSYYHGGCRHLAYTCIAATGC 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,414,214
Number of Sequences: 27780
Number of extensions: 315717
Number of successful extensions: 594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)