Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j03f
         (647 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16ZI0 Cluster: Bhlh factor math6; n=1; Aedes aegypti|R...    36   1.1  
UniRef50_Q4T7F4 Cluster: Chromosome undetermined SCAF8104, whole...    33   4.5  
UniRef50_Q5KQ39 Cluster: Membrane protein, putative; n=1; Filoba...    33   4.5  
UniRef50_A4HZZ8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.0  
UniRef50_Q7S241 Cluster: Predicted protein; n=2; Neurospora cras...    33   7.9  

>UniRef50_Q16ZI0 Cluster: Bhlh factor math6; n=1; Aedes aegypti|Rep:
           Bhlh factor math6 - Aedes aegypti (Yellowfever mosquito)
          Length = 358

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 27/140 (19%)
 Frame = +1

Query: 226 YGKGLSLKMSNFSTNGDAVQSTVKDRMLERDAGFVSGG---EDD---------DSCSGPA 369
           Y K  ++++S     G A+ +      LERD+GF SG    EDD         D    P 
Sbjct: 11  YPKLSAVELSAILMKGAAMSAAAS---LERDSGFNSGSSEHEDDLKSLDQSSRDGLITPE 67

Query: 370 HSDDSGV--RLVESETRNKRERT-PSR-------LQPPKKRIR----LXXXXXXXXXXXX 507
           +S +  V  +L ++  +NKR+ T P R       L P KKRIR    +            
Sbjct: 68  NSSEDSVEVKLPQTVIKNKRKSTEPLRVISDAELLGPIKKRIRYDDQIKEEKESLLDHHV 127

Query: 508 XQNPFRPWSFTEE-PQREPL 564
             NPFRPW+ +E+ P   PL
Sbjct: 128 NGNPFRPWAPSEDVPAGHPL 147


>UniRef50_Q4T7F4 Cluster: Chromosome undetermined SCAF8104, whole
            genome shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
            Chromosome undetermined SCAF8104, whole genome shotgun
            sequence - Tetraodon nigroviridis (Green puffer)
          Length = 1357

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = +1

Query: 232  KGLSLKMSNFSTNGDAVQSTVKDRMLERDAGFVSGGEDDDSCSGPAHSDDSGVRLVESET 411
            K +S +   F    +A++  +++ + E + G    G+D  + +G    D S +   E   
Sbjct: 965  KSISYRFDEFD---EAIEEAIEEDVKEAEGGGAGRGKDMSNITGHRGKDMSSILQAEDGK 1021

Query: 412  RNKRERTPSRLQPPKKRIRL 471
             N +   PS  Q  KKR RL
Sbjct: 1022 ENGQLPRPSASQRRKKRRRL 1041


>UniRef50_Q5KQ39 Cluster: Membrane protein, putative; n=1;
            Filobasidiella neoformans|Rep: Membrane protein, putative
            - Cryptococcus neoformans (Filobasidiella neoformans)
          Length = 1247

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 374  QMTPEFGWWSLRPGTSGSGHPAD-SSLQRNEYASVPVMTWPAPTVTRRTRFG-RGLSPKN 547
            Q  P  G+  +R G S   +P D  +L      S P+MT P PT+ R ++ G R +SP +
Sbjct: 827  QSGPSRGFSVVRGGRSNYQNPYDIQNLNAGSDTSTPIMTMPVPTI-RVSQVGQRPMSPPH 885

Query: 548  RRE 556
             R+
Sbjct: 886  SRQ 888


>UniRef50_A4HZZ8 Cluster: Putative uncharacterized protein; n=1;
           Leishmania infantum|Rep: Putative uncharacterized
           protein - Leishmania infantum
          Length = 591

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +1

Query: 274 DAVQSTVKDRMLERDAGFVSGGEDDDSCSGPAHSDDSGVRLVESETRNKRERTPSRLQPP 453
           D V  T      + D+G   G   DDS S P H DD G R  +  +R  R+ T   L+  
Sbjct: 424 DRVSGTPSWAAHDEDSGAQRGSSIDDSLSEPDHGDDGGGR-SQPVSRTARDTTSEGLREQ 482

Query: 454 KKRIR 468
            ++++
Sbjct: 483 LEQLK 487


>UniRef50_Q7S241 Cluster: Predicted protein; n=2; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 710

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 331 SGGEDDDSCSGPAHSDDSGVRLVESETRNKRERTPSRLQPPK 456
           S G + D  +   H DDS     +S++ ++R+  P R+ PP+
Sbjct: 406 SSGNESDQGNAEIHPDDSSPEPGDSDSNHQRDDRPPRILPPR 447


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,135,177
Number of Sequences: 1657284
Number of extensions: 12346865
Number of successful extensions: 41029
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41004
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)