Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j03f
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    25   0.54 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    24   0.94 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.6  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   2.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   3.8  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   8.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.7  

>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 228 IKNEHPKNKQKFKSS*-IFIFCKPLNNFVTGTSLNTKIKST*KLSIYNYISNTRSITFGA 52
           IK E     +KF +S  I++    +  FVT T   +  +S+  L +YN I     ++F +
Sbjct: 17  IKMEEKLVVEKFLNSLQIYLQHNQIFGFVTFTCTRSNFRSSKLLILYNIILQVLFVSFVS 76

Query: 51  Y 49
           Y
Sbjct: 77  Y 77


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +1

Query: 247 KMSNFSTNGDAVQSTVKDRMLERDAGFVS-GGEDDDSCSGPAHSDDSGVR 393
           K  N  TNGD  Q   ++  LE      S  G+DD+     A   +  VR
Sbjct: 81  KRPNGDTNGDTSQVDDQNESLEASVNENSKNGDDDEGHEWQADVSEEAVR 130


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 201 QKFKSS*-IFIFCKPLNNFVTGTSLNTKIKST*KLSIYNYISNTRSITFGAY 49
           +KF +S  I++    +  FVT T   +  +S+  L +YN I     ++F +Y
Sbjct: 8   EKFLNSLQIYLQHNQIFGFVTFTCTRSNFRSSKLLILYNIILQVLFVSFVSY 59


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 307 LERDAGFVSGG-EDDDSCSGPAHSDDSGVRLVESE 408
           L +  G  +G  EDDD+ S P   DD    + E +
Sbjct: 216 LSKSGGGSAGSLEDDDNISDPEDDDDKDQDMDEGD 250


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = -1

Query: 563 KGSLCGSSVKDH---GRNGFCESLSGLATSSLELRRIRFFGGWS 441
           KG L      D    G+ G  E +  L  ++  L+ +   GGWS
Sbjct: 128 KGKLSSFESNDETKDGKVGLYERIQKLKKANPSLKTLLAIGGWS 171


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 445 GVGWVSAPACS 413
           G  W+++PAC+
Sbjct: 102 GFSWIASPACT 112


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/37 (18%), Positives = 21/37 (56%)
 Frame = +1

Query: 223 FYGKGLSLKMSNFSTNGDAVQSTVKDRMLERDAGFVS 333
           F+G+  +L+ +N +  G  ++   ++    ++ GF++
Sbjct: 419 FFGRSFTLQFTNETQVGAPIKGPGREGFYTQNPGFLA 455


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,865
Number of Sequences: 336
Number of extensions: 3071
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)