Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j03f
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    26   4.1  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   4.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   4.1  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   5.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.4  

>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -1

Query: 560 GSLCGSSVKDHGRNGFCESLSGLATSSLELRRIRFFGG-WSRLGV 429
           G  CG  V+    NG C+    L    + L  I+  GG W R  V
Sbjct: 222 GGACGVGVESTVVNGLCDPPVILRPGGISLEEIQSSGGAWERTKV 266


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/72 (23%), Positives = 25/72 (34%)
 Frame = +2

Query: 332 RVARTTIHARDLRTQMTPEFGWWSLRPGTSGSGHPADSSLQRNEYASVPVMTWPAPTVTR 511
           R  +   H  D +      F   +     S S  P   S  ++   + P+ T PAP +T 
Sbjct: 687 RTVKDKSHVHDTQRSSDVNFSRQNGTRSHSPSVSPVGFSFDKSPVTTPPLPTAPAPVITS 746

Query: 512 RTRFGRGLSPKN 547
           R        P N
Sbjct: 747 RHALVNNQFPTN 758


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 152  LFSGLQNINIYDDLNFCLFF-GCSF 223
            LF+G  NI  Y+  + C FF G SF
Sbjct: 2007 LFTGTSNIQTYEIYSVCAFFIGASF 2031


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 125 VFKDVPVTKLFSGLQNINIYDDLNFCLFFGCSFFMAK 235
           ++K V +  LFS LQ   +Y+D +  +F   +  M K
Sbjct: 732 LWKPVLMDSLFSNLQKFPVYEDWHLLIFNASTSSMMK 768


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 370  HSDDSGVRLVESETRNKRERTPSRLQPPKKRI 465
            H D  G  +  S T  KR +    ++PP K++
Sbjct: 1643 HIDSEGRLITISRTSEKRMKNEEFVEPPSKKL 1674


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,139
Number of Sequences: 5004
Number of extensions: 50257
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)