Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j03f
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0072 - 20682424-20682870,20683928-20684854 31 1.0
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 30 1.4
01_06_0756 - 31731607-31731752,31732368-31732467,31732716-317329... 30 1.4
02_01_0616 + 4616936-4617307,4618723-4618809,4619322-4619384,461... 29 2.4
03_06_0430 + 33868269-33868892 29 3.2
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 7.4
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 28 7.4
03_05_0185 + 21713500-21714291 28 7.4
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573... 27 9.7
08_01_0365 - 3233284-3233589,3233678-3233839 27 9.7
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 27 9.7
02_02_0336 + 9081958-9082222,9082466-9082569,9082632-9082681,908... 27 9.7
>09_06_0072 - 20682424-20682870,20683928-20684854
Length = 457
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 286 STVKDRMLERDAGFVSGGEDDDSCSGPAHSDDSGVRLVESETRNKRERTPSRLQPP 453
ST++ R R G+ +DD+ + P SD S + +V+ + E T S PP
Sbjct: 41 STLRRRRPRR--GWSLKQHEDDTAASPTFSDSSTITVVDEAVKPDSEETSSHRPPP 94
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 427 APACSGSQTPPAELRSHLSAQVPSMNRRP 341
APA + SQ PPA+ +S AQV S + P
Sbjct: 600 APAQAKSQAPPAQAKSQAPAQVKSQAKAP 628
>01_06_0756 -
31731607-31731752,31732368-31732467,31732716-31732943,
31733390-31733474,31733583-31733662,31733755-31733826,
31733964-31734058,31735442-31735523,31735646-31735927
Length = 389
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 392 GWWSLRPGTSGSGHPADSSLQRNEYASVPVMTWPAPTVTRRTRFGRGLSP 541
G ++ TSG GH + + +++ + P+ P TR GRG SP
Sbjct: 330 GRGQIQQNTSGQGHVSSPATSGSDHVNKPIPGPRMPDGTRGFTMGRGKSP 379
>02_01_0616 +
4616936-4617307,4618723-4618809,4619322-4619384,
4619478-4619537,4619570-4619602,4621584-4621751
Length = 260
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +1
Query: 319 AGFVSGGEDDDSCSGPAHSDDSGVRLVESETRNKR--ERTPSRLQP----PKKRIRL 471
A SGGED CS P H V + R ++ PS L+P P+K++RL
Sbjct: 99 AASTSGGEDGAFCSPPGHRPAPATTKVSAMGRQQQLPFSAPSPLRPAGQRPRKKMRL 155
>03_06_0430 + 33868269-33868892
Length = 207
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 271 GDAVQSTVKDRMLERDAGFVSGGEDDDSCS 360
GDAV + R ER A + GGEDDD+ +
Sbjct: 55 GDAVVQPPRLRCCERCADRIRGGEDDDAAA 84
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 528 RPKRVLRVTVGAGHVITGTEAYSFLWRLESAG 433
R +++VTV + H++TG + S +W ++ AG
Sbjct: 394 RSHSLVKVTVRSEHLVTGQKWRSHIWLVDLAG 425
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +1
Query: 277 AVQSTVKDRMLERDAGFVSGGEDDDSCSGPAHSDDSGVRLVESETRNKRERTPSRLQ 447
A K R+ E A DDD+ +DD +V +T++K + P ++
Sbjct: 375 AFDEAEKKRLEEESANSKIDDSDDDASDDEDEADDDKADVVAEQTKDKGDEKPQDIK 431
>03_05_0185 + 21713500-21714291
Length = 263
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = +1
Query: 229 GKGLSLKMSNFSTNGDAVQSTV----KDRMLE--RDAGFVSGGEDDDSC-SGPAHSDDSG 387
G G S++ + DA+ ST +D +L R G +GG D +C SG + SD G
Sbjct: 141 GGGCSIRQKEDTDEIDALMSTEDGEEEDDVLSTGRTPGCRAGGSPDSTCSSGASRSDCGG 200
Query: 388 VRLVES-ETRNKRERTPSRLQPPK 456
R E+ K+ER ++ K
Sbjct: 201 GRKPEAGGGERKKERMKKMMRTLK 224
>10_02_0137 -
5730778-5730873,5732137-5732334,5732413-5732625,
5732748-5732870,5733726-5733841,5734530-5734897,
5735498-5735649,5736557-5736715,5737773-5737946
Length = 532
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 331 SGGEDDDSCSGPAHSDDSGVRLVESETRNK--RERTPSRLQPPKK 459
SGG DD SG A S + VES+T+ ++ TPS +P K
Sbjct: 414 SGGGDDSKASGGAASKKA---KVESDTKPSVAKDETPSSSKPASK 455
>08_01_0365 - 3233284-3233589,3233678-3233839
Length = 155
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 319 AGFVSGGEDDDSCSGPAHSDDSGVRLVESET 411
A V G +DDDS G +DD+GV +T
Sbjct: 119 AADVGGKDDDDSGGGDGAADDAGVDYAPPKT 149
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 380 TPEFGWWSLRPGTSGSGHPADSSLQRNEYASVP 478
TP G W PG +G P SL+RN + P
Sbjct: 289 TPGIGRWDATPGRAGGATP---SLKRNRWDETP 318
>02_02_0336 +
9081958-9082222,9082466-9082569,9082632-9082681,
9083484-9083566,9084129-9084257,9085821-9085881,
9086010-9086826
Length = 502
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 298 DRMLERDAGFVSGGEDDDSCSGPAHSDDSGVRLVESETRNKRERTPSRLQ 447
DR+L + V+G +DDD P S D G + R+++ R L+
Sbjct: 39 DRVLRIEV--VAGDDDDDDDHAPGSSRDGGAGSLSDWARHRKRRREELLK 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,544,323
Number of Sequences: 37544
Number of extensions: 352222
Number of successful extensions: 1264
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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