Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j03f
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)                       33   0.26 
SB_46137| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)                       30   1.9  
SB_25045| Best HMM Match : DUF638 (HMM E-Value=3.2)                    29   3.3  
SB_50234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_22613| Best HMM Match : PPI_Ypi1 (HMM E-Value=6.3)                  28   5.7  
SB_35123| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_29045| Best HMM Match : Cytadhesin_P30 (HMM E-Value=7.4)            28   7.5  
SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)                   28   7.5  
SB_53981| Best HMM Match : DUF365 (HMM E-Value=5.6)                    27   9.9  
SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047)                   27   9.9  
SB_43727| Best HMM Match : TolA (HMM E-Value=0.21)                     27   9.9  
SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)
          Length = 909

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
 Frame = +1

Query: 268  NGDAVQSTVKDRMLERDAGFVSGGEDD-DSCSGPAHSDDSGVRLVESETRNKRERTPSRL 444
            +G++ Q T++DR   R        E   ++C  P+  +++   +  S+  +K    P  L
Sbjct: 693  DGESPQDTLEDRNAARSGSRYETVEGSKEACKKPSSPEETCKEIYSSKEMSKEASLPEEL 752

Query: 445  QPPKKRIRLXXXXXXXXXXXXXQNPFRPWSFTEEPQREPLSLVKKSGE 588
                    +             +  F+  S TEE  R+PL L+K + +
Sbjct: 753  FK-----EISSTEEGCQETSSTKEVFKETSSTEEAPRKPLQLIKYASD 795


>SB_46137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 370 HSDDSGVRLVESETRNKRERTP 435
           HSDD GV ++ES    +R+ TP
Sbjct: 280 HSDDEGVFIIESNNNKRRKATP 301


>SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)
          Length = 594

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 247 KMSNFSTNGDAVQSTVKDRMLERDAGFVSGGEDDDSCSGPAHSDDS 384
           K+  F  + + V+ T +  + E  + F  GG+DD S  G A SDD+
Sbjct: 424 KLYQFDFDDEDVRPTQRVDVAESLSSFPRGGDDDASSIGYAPSDDT 469


>SB_25045| Best HMM Match : DUF638 (HMM E-Value=3.2)
          Length = 432

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 316 DAGFVSGGEDDDSCSGPAHSDDSGV 390
           D G V GG  D  C    H+DD GV
Sbjct: 109 DGGHVDGGYVDGGCVDGGHADDDGV 133


>SB_50234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 436 WVSAPACSG-SQTPPAELRSHLSAQVPSMNRR 344
           WVS+    G +QTPP    +H S Q+P+   +
Sbjct: 58  WVSSQPVGGYTQTPPPTTYAHFSEQIPNRTHK 89


>SB_22613| Best HMM Match : PPI_Ypi1 (HMM E-Value=6.3)
          Length = 120

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 247 KMSNFSTNGDAVQSTVKDRMLER-DAGFVS-GGEDDDSCSGPAHSDD 381
           KM NF  +    + +  DR ++  D G  + GG DDD+  G  H DD
Sbjct: 69  KMPNFKDSAKNGEVSSSDRTMQPGDGGDDNDGGGDDDNGDGDDHDDD 115


>SB_35123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 370 HSDDSGVRLVESETRNKRERTPSRLQPPKK 459
           HS+DSG+ L   ET   + ++    +PPKK
Sbjct: 94  HSEDSGMNLSFEETNLPKGQSFEETEPPKK 123


>SB_29045| Best HMM Match : Cytadhesin_P30 (HMM E-Value=7.4)
          Length = 285

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 370 HSDDSGVRLVESETRNKRERTPSRLQPPKK 459
           HS+DSG+ L   ET   + ++    +PPKK
Sbjct: 255 HSEDSGMNLSFEETNLPKGQSFEETEPPKK 284


>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 1693

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 572 TKDKGSLCGSSVKDHGRNGFCESLSGLATSSLEL 471
           T  KG+L G +++DH RNG   +       +LEL
Sbjct: 648 TVPKGALRGDALRDHARNGSDATKLSYGIKNLEL 681


>SB_53981| Best HMM Match : DUF365 (HMM E-Value=5.6)
          Length = 117

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 160 TKQLCYWHVFEHKNKKHLKI 101
           +K+ C WHV   KN K+L++
Sbjct: 61  SKRKCVWHVLHTKNNKNLEL 80


>SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047)
          Length = 727

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 430 SAPACSGSQTPPAELRSHLSAQVP 359
           SA    GS TPP +L S   AQVP
Sbjct: 272 SARGRGGSTTPPVDLESQEDAQVP 295


>SB_43727| Best HMM Match : TolA (HMM E-Value=0.21)
          Length = 340

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 407 RPGTSGSGHPADSSLQRNEYAS 472
           R GTSG+G P    LQ  EY S
Sbjct: 232 RSGTSGTGSPVTRKLQPREYES 253


>SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1062

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +1

Query: 235 GLSLKMSNFSTNGDAVQSTVKDRMLERDAGFVSGGEDDDSCSGPAHSDDSGVRLVESETR 414
           G S K  + ST+  A +  ++D+  E D       ED++ CS     +D  V   E E  
Sbjct: 179 GNSKKKDDLSTSSPAEE--IEDKDYEPDGEDEDENEDNEGCSNDDEDNDIDVTDEEDELM 236

Query: 415 NKRE 426
            K E
Sbjct: 237 MKAE 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,792,734
Number of Sequences: 59808
Number of extensions: 394662
Number of successful extensions: 1264
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)