Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j03f
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61953-9|AAK82910.1| 748|Caenorhabditis elegans Hypothetical pr... 31 0.70
U61953-8|AAC48078.1| 746|Caenorhabditis elegans Hypothetical pr... 31 0.70
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu... 31 0.93
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu... 31 0.93
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein. 31 0.93
AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical ... 30 1.6
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z68749-7|CAA92962.2| 728|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z68749-6|CAC35818.1| 689|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z68749-5|CAC35817.1| 712|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z68219-9|CAA92483.2| 728|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z68219-7|CAC35827.1| 689|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z68219-6|CAC35826.1| 712|Caenorhabditis elegans Hypothetical pr... 28 6.6
U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical pr... 28 6.6
AY851363-1|AAW34127.1| 728|Caenorhabditis elegans fibulin-1D sp... 28 6.6
AF070477-1|AAC24035.1| 589|Caenorhabditis elegans fibulin-1D pr... 28 6.6
AF051403-2|AAC28323.1| 712|Caenorhabditis elegans fibulin-1 iso... 28 6.6
AF051403-1|AAC28324.1| 689|Caenorhabditis elegans fibulin-1 iso... 28 6.6
AF051402-1|AAC28322.1| 712|Caenorhabditis elegans fibulin-1 iso... 28 6.6
AF051401-1|AAC28321.1| 689|Caenorhabditis elegans fibulin-1 iso... 28 6.6
AB212860-1|BAD98165.1| 712|Caenorhabditis elegans fibulin-1C pr... 28 6.6
U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical pr... 27 8.7
U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical pr... 27 8.7
U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical pr... 27 8.7
>U61953-9|AAK82910.1| 748|Caenorhabditis elegans Hypothetical
protein R08C7.10b protein.
Length = 748
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 283 QSTVKDRMLERDAGFVSGG---EDDDSCSGPAHSDDSGVRLVESETRNKRER 429
Q+ + D L+R+ F GG E+++ G SD+ GVR RNK +R
Sbjct: 598 QAQIVDADLDRELAFDEGGCGDEEEEEEGGDESSDEDGVRKDGRLDRNKMDR 649
>U61953-8|AAC48078.1| 746|Caenorhabditis elegans Hypothetical
protein R08C7.10a protein.
Length = 746
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 283 QSTVKDRMLERDAGFVSGG---EDDDSCSGPAHSDDSGVRLVESETRNKRER 429
Q+ + D L+R+ F GG E+++ G SD+ GVR RNK +R
Sbjct: 596 QAQIVDADLDRELAFDEGGCGDEEEEEEGGDESSDEDGVRKDGRLDRNKMDR 647
>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform b protein.
Length = 1273
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 331 SGGEDDDSCSGPAHSDDSGVRLVESE-TRNKRERTPSRLQPPKKRI 465
SG + DS P H+D S V+L S+ T + +ERT R PP K +
Sbjct: 1079 SGSQRSDS---PPHTDVSYVQLHSSDGTGSSKERTGERRTPPNKTL 1121
>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform a protein.
Length = 1269
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 331 SGGEDDDSCSGPAHSDDSGVRLVESE-TRNKRERTPSRLQPPKKRI 465
SG + DS P H+D S V+L S+ T + +ERT R PP K +
Sbjct: 1079 SGSQRSDS---PPHTDVSYVQLHSSDGTGSSKERTGERRTPPNKTL 1121
>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
Length = 1273
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 331 SGGEDDDSCSGPAHSDDSGVRLVESE-TRNKRERTPSRLQPPKKRI 465
SG + DS P H+D S V+L S+ T + +ERT R PP K +
Sbjct: 1079 SGSQRSDS---PPHTDVSYVQLHSSDGTGSSKERTGERRTPPNKTL 1121
>AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical
protein F56A11.6 protein.
Length = 442
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +1
Query: 295 KDRMLERDAGFVSGGEDDDSCSGPAHSDDSGVRLVESETRNKRERTPSRLQPPKKR 462
+DR +RD DD SCS + D S R + ++R+ RER SR K R
Sbjct: 375 EDRDRDRDRDRSRKDRDDKSCSRRSRDDRSEERK-DRKSRDDRERPRSRQDKSKTR 429
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 340 EDDDSCSGPAHSDDSGVRLVESETRNKRERTPS 438
EDD+ S AHSDD V E R E+ S
Sbjct: 479 EDDERKSQAAHSDDDSVTANEDSARRNSEKRRS 511
>Z68749-7|CAA92962.2| 728|Caenorhabditis elegans Hypothetical
protein F56H11.1c protein.
Length = 728
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 366 FRCQQKGNLCAHGYEVNGATGFCEDVN 392
>Z68749-6|CAC35818.1| 689|Caenorhabditis elegans Hypothetical
protein F56H11.1b protein.
Length = 689
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 327 FRCQQKGNLCAHGYEVNGATGFCEDVN 353
>Z68749-5|CAC35817.1| 712|Caenorhabditis elegans Hypothetical
protein F56H11.1a protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 327 FRCQQKGNLCAHGYEVNGATGFCEDVN 353
>Z68219-9|CAA92483.2| 728|Caenorhabditis elegans Hypothetical
protein F56H11.1c protein.
Length = 728
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 366 FRCQQKGNLCAHGYEVNGATGFCEDVN 392
>Z68219-7|CAC35827.1| 689|Caenorhabditis elegans Hypothetical
protein F56H11.1b protein.
Length = 689
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 327 FRCQQKGNLCAHGYEVNGATGFCEDVN 353
>Z68219-6|CAC35826.1| 712|Caenorhabditis elegans Hypothetical
protein F56H11.1a protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 327 FRCQQKGNLCAHGYEVNGATGFCEDVN 353
>U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical
protein SSSD1.1 protein.
Length = 636
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +2
Query: 248 KCLISVQMETLSSLLLKIVC*KETLVLFRVARTTIHARDLRTQMTPEFGWWSLRPGTSGS 427
+C+++ +ET+S+ ++ +V + + + T +++ +R TP+ L+PG
Sbjct: 269 ECVVANSVETISTRVMLLVEITKPQMASSIKFTCLNSSSMRISWTPDSENHFLKPGNERK 328
Query: 428 GH 433
G+
Sbjct: 329 GY 330
>AY851363-1|AAW34127.1| 728|Caenorhabditis elegans fibulin-1D
splice variant protein.
Length = 728
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 366 FRCQQKGNLCAHGYEVNGATGFCEDVN 392
>AF070477-1|AAC24035.1| 589|Caenorhabditis elegans fibulin-1D
precursor protein.
Length = 589
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 227 FRCQQKGNLCAHGYEVNGATGFCEDVN 253
>AF051403-2|AAC28323.1| 712|Caenorhabditis elegans fibulin-1
isoform C precursor protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 327 FRCQQKGNLCAHGYEVNGATGFCEDVN 353
>AF051403-1|AAC28324.1| 689|Caenorhabditis elegans fibulin-1
isoform D precursor protein.
Length = 689
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 327 FRCQQKGNLCAHGYEVNGATGFCEDVN 353
>AF051402-1|AAC28322.1| 712|Caenorhabditis elegans fibulin-1
isoform C precursor protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 327 FRCQQKGNLCAHGYEVNGATGFCEDVN 353
>AF051401-1|AAC28321.1| 689|Caenorhabditis elegans fibulin-1
isoform D precursor protein.
Length = 689
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 327 FRCQQKGNLCAHGYEVNGATGFCEDVN 353
>AB212860-1|BAD98165.1| 712|Caenorhabditis elegans fibulin-1C
protein.
Length = 712
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 578 FLTKDKGSLCGSSVKDHGRNGFCESLS 498
F + KG+LC + +G GFCE ++
Sbjct: 327 FRCQQKGNLCAHGYEVNGATGFCEDVN 353
>U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical
protein T28D9.3a protein.
Length = 341
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 105 KLSIYNYISNTRSITFGAYSNRSQTSSQLNTPR 7
+L +YN + N ++ F Y + S +N PR
Sbjct: 75 QLMLYNLVLNAATVLFVEYYRMQKVESNINNPR 107
>U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical
protein T28D9.3c protein.
Length = 274
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 105 KLSIYNYISNTRSITFGAYSNRSQTSSQLNTPR 7
+L +YN + N ++ F Y + S +N PR
Sbjct: 76 QLMLYNLVLNAATVLFVEYYRMQKVESNINNPR 108
>U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical
protein T28D9.3b protein.
Length = 342
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 105 KLSIYNYISNTRSITFGAYSNRSQTSSQLNTPR 7
+L +YN + N ++ F Y + S +N PR
Sbjct: 76 QLMLYNLVLNAATVLFVEYYRMQKVESNINNPR 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,951,878
Number of Sequences: 27780
Number of extensions: 294694
Number of successful extensions: 979
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -