Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j01f
         (522 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    25   0.54 
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    25   0.54 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    25   0.54 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.9  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   2.9  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 325 PGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDE 444
           P G Y      +A  G  +G+      D Y D+S LG++E
Sbjct: 438 PAGSYCDVISGNAENGSCSGKTITVGGDGYADIS-LGANE 476


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 325 PGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDE 444
           P G Y      +A  G  +G+      D Y D+S LG++E
Sbjct: 439 PAGSYCDVISGNAENGSCSGKTITVGGDGYADIS-LGANE 477


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 325 PGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDE 444
           P G Y      +A  G  +G+      D Y D+S LG++E
Sbjct: 439 PAGSYCDVISGNAENGSCSGKTITVGGDGYADIS-LGANE 477


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 52  ETNSLTVWDELTSPLNLVLIGVIVYLIYKIIKSNFESEANVXXXXXXXXKLRKD 213
           + +S  VW  + +   L LI V V LI      NF SE +         K +K+
Sbjct: 227 QASSFVVWPLVENNPTLYLIPVSVILISVGWWENFVSETSYLPFIRALGKSKKE 280


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 52  ETNSLTVWDELTSPLNLVLIGVIVYLIYKIIKSNFESEANVXXXXXXXXKLRKD 213
           + +S  VW  + +   L LI V V LI      NF SE +         K +K+
Sbjct: 227 QASSFVVWPLVENNPTLYLIPVSVILISVGWWENFVSETSYLPFIRALGKSKKE 280


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 35  YTKWRTKLIASQYGTN 82
           + ++RTK++A  +GTN
Sbjct: 100 FNEFRTKILAQVHGTN 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.134    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,003
Number of Sequences: 336
Number of extensions: 1891
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)