Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j01f
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)             151   3e-37
SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)                87   8e-18
SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)               81   7e-16
SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   4e-09
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)                 33   0.19 
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)           28   5.4  
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)                   28   5.4  
SB_28695| Best HMM Match : Ras (HMM E-Value=0)                         27   7.1  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         27   9.4  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score =  151 bits (367), Expect = 3e-37
 Identities = 78/154 (50%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
 Frame = +1

Query: 64  LTVWDELTSPLNLVLIGVIVYLIYKIIKSNFESEANVXXXXXXXXKLRKDLTVAELKKYD 243
           L     L+SP+ +VL+ V+V++I +I+K+ F+               ++D T+ ELK+YD
Sbjct: 11  LNFLSSLSSPIQIVLLIVLVFVIRRILKAKFDKVPEEPPPKRLEPFKKRDFTLDELKEYD 70

Query: 244 GTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASE-NDEYDD 420
           G +    VL+AVNG +FDVTRGK FYGPGGPYS FAG DA+RGLAT  +      DEYDD
Sbjct: 71  GLKSP-YVLMAVNGKVFDVTRGKDFYGPGGPYSNFAGHDASRGLATFSLGPEAIKDEYDD 129

Query: 421 VSDLGSDEIASAKEWEEQFREKYDIVGRLLKLGE 522
           +SDL   +  S +EWE+QF EKYD+VGRLLK GE
Sbjct: 130 LSDLNGMQQDSLREWEQQFDEKYDLVGRLLKPGE 163


>SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)
          Length = 310

 Score = 87.0 bits (206), Expect = 8e-18
 Identities = 40/130 (30%), Positives = 73/130 (56%)
 Frame = +1

Query: 121 VYLIYKIIKSNFESEANVXXXXXXXXKLRKDLTVAELKKYDGTQPDGRVLLAVNGIIFDV 300
           V ++  ++   F ++A +             L+  +L K+DG+QPD  + +A+ G ++DV
Sbjct: 57  VLILVSVVYVYFNADAPIIKARSSKRTEGVLLSTEDLAKHDGSQPDANIYIAILGKVYDV 116

Query: 301 TRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIASAKEWEEQFR 480
            +G+RFYGPG  Y  FAG+D+T    TG    ++    DD S+L ++++   K W E ++
Sbjct: 117 EKGRRFYGPGTGYHVFAGRDSTPSFVTGMFDRAK--ATDDCSNLKNEDLLGIKGWMEFYQ 174

Query: 481 EKYDIVGRLL 510
           + Y  VG+++
Sbjct: 175 KDYKYVGKVV 184


>SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 80.6 bits (190), Expect = 7e-16
 Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
 Frame = +1

Query: 208 KDLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQ 387
           ++ TV ELK YDG   +  + +AVNG +FDVT    ++GP GP    AGKDA+R L T  
Sbjct: 72  REFTVRELKGYDGVNKE-LIYVAVNGKVFDVTSAWNYFGPAGPDCLLAGKDASRALVTFS 130

Query: 388 V----AASENDEYDDVSDLGSDEIASAKEWEEQFREKYDIVGRLLK 513
           V       + D  DD++DL   +     E+E Q+ E+Y  VGRL++
Sbjct: 131 VDNFYQTEQRDSMDDLNDLNPLQRDCLFEYETQYMERYPCVGRLVE 176


>SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 27/61 (44%), Positives = 41/61 (67%)
 Frame = +1

Query: 214 LTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVA 393
           L+  +L K+DG QPD  + +A+ G ++DV +G+RFYGPG  Y  FAG+D+T    T  V+
Sbjct: 272 LSTVDLVKHDGLQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVTVLVS 331

Query: 394 A 396
           +
Sbjct: 332 S 332


>SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
 Frame = +1

Query: 208 KDLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQ 387
           K  T  EL  ++G   +  + +AV G++FDV+  K  YG G  Y++ AGK+ +R +A   
Sbjct: 46  KLFTKDELATFNGRNSNSPIYVAVKGVVFDVSTSKDLYGYGESYNSMAGKECSRAIAKWS 105

Query: 388 VAASENDEYDDVSDLGSDEIAS-AKEWEEQFREKYDIVG 501
           +AA   +   ++  L  DE+    K + + +  KY +VG
Sbjct: 106 LAAENMN--GNLDGLTKDELQRLEKNFHDVYMRKYPVVG 142


>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
          Length = 1127

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +1

Query: 334 PYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIASAKEWE---EQFREKYDIVGR 504
           PY+ + G+D TR +   Q+A + N  +DDV+ L + +I     W     +FR  + +V R
Sbjct: 421 PYAEYKGEDETRIVPFKQLAETANIMFDDVAKLPA-KIYFIVLWSIEARRFRVMFTLVAR 479

Query: 505 LLKLGE 522
            LK  E
Sbjct: 480 GLKTQE 485


>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6116

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 274  AVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASEND 408
            AV+ II DV      +  GG Y+A   +DA  G     V A +ND
Sbjct: 3633 AVSVIITDVNEHTPQFTSGGSYTAVIAEDAPVGSFVTNVTAIDND 3677


>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
          Length = 585

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/88 (25%), Positives = 38/88 (43%)
 Frame = +1

Query: 145 KSNFESEANVXXXXXXXXKLRKDLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYG 324
           +SN  ++ NV        ++R D   A      G + DGR   +   + +D +R +  +G
Sbjct: 285 QSNDRAQGNVTVVSTAHVQVRADDVQA--MNVSGVKSDGRPSSSGQDV-YDGSR-QSTHG 340

Query: 325 PGGPYSAFAGKDATRGLATGQVAASEND 408
           P  P+   A   A     +GQ + SE +
Sbjct: 341 PALPWEELAQTQAPHSRRSGQSSGSETE 368


>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
          Length = 681

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 521 SPNLRRRPTMSYFSLNCSSHSLAEAISSEPRSLTSSYSSFSDAATCPVAKPLVA-SLPAN 345
           SP+  R   +S  S +C S S   + S E  + TSSY  ++  A+  V   L A S+ + 
Sbjct: 423 SPSRWRLTQLS--SQSCESCSTRTSKSQESNTETSSYLQYTQPASFYVTSKLTAVSITSQ 480

Query: 344 AEY 336
           +EY
Sbjct: 481 SEY 483


>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1058

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 476 NCSSHSLAEAISSEPRSLTSSYSSFS 399
           +CSSH  +++  S PR+++SS+ + S
Sbjct: 65  DCSSHGSSDSFFSSPRAVSSSFKTDS 90


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 521  SPNLRRRPTMSYFSLNCSSHSLAEAISSEPRSLTSSYSSFSDAATCPVAKPLVA-SLPAN 345
            SP+  R   +S  S +C S S   + S E  + TSSY  ++  A+  V   L A S+ + 
Sbjct: 2432 SPSRWRLTQLS--SQSCESCSTRTSKSQESNTGTSSYLQYTQPASFFVTSKLTAVSITSQ 2489

Query: 344  AEY 336
            +EY
Sbjct: 2490 SEY 2492


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = -2

Query: 521  SPNLRRRPTMSYFSLNCSSHSLAEAISSEPRSLTSSYSSFSDAAT-CPVAKPLVASLP 351
            SP     P   Y +L CS+       S+EP  +   Y +     T CP   P+    P
Sbjct: 1981 SPGFYCSPPTIYPNLKCSAGHWCSGRSTEPSPVNKPYGTDCPNGTYCPEGTPIPVPCP 2038


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 397  SENDEYDDVSDLGSDEIASA-KEWEEQFREKYDIVGRLLKLGE 522
            S N E+DD  ++  DE+  A KE ++   E   +  + L+LGE
Sbjct: 2232 SLNTEFDDTVEIKKDELLQAEKENDDAKAELESLKRKFLELGE 2274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.134    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,810,099
Number of Sequences: 59808
Number of extensions: 238920
Number of successful extensions: 545
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)