Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11j01f
(522 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41552-4|AAD31555.1| 198|Caenorhabditis elegans Vema (mammalian... 105 1e-23
U41552-5|AAP82646.1| 183|Caenorhabditis elegans Vema (mammalian... 104 3e-23
AL024499-6|CAA19709.1| 326|Caenorhabditis elegans Hypothetical ... 66 1e-11
AC025727-4|AAG23388.3| 463|Caenorhabditis elegans Hypothetical ... 32 0.29
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 1.5
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 28 3.5
Z83113-10|CAI46598.1| 556|Caenorhabditis elegans Hypothetical p... 27 6.2
Z83113-9|CAB05548.2| 497|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z73975-5|CAA98278.2| 556|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z73975-4|CAA98279.2| 497|Caenorhabditis elegans Hypothetical pr... 27 6.2
AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical ... 27 6.2
>U41552-4|AAD31555.1| 198|Caenorhabditis elegans Vema (mammalian
ventral midlineantigen) related protein 1, isoform a
protein.
Length = 198
Score = 105 bits (253), Expect = 1e-23
Identities = 62/153 (40%), Positives = 84/153 (54%)
Frame = +1
Query: 55 TNSLTVWDELTSPLNLVLIGVIVYLIYKIIKSNFESEANVXXXXXXXXKLRKDLTVAELK 234
T L+ W E T + L+ V+ + Y + +S A D+TV EL+
Sbjct: 15 TMDLSSWFEFTMYDAVFLVVVLGFFFYWLTRSEQPLPAPPKELAPLPMS---DMTVEELR 71
Query: 235 KYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEY 414
KYDG + + +L +NG I+DVTRGK FYGPG Y AG DATR L T A + E+
Sbjct: 72 KYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQNA-VSSEW 129
Query: 415 DDVSDLGSDEIASAKEWEEQFREKYDIVGRLLK 513
DD + + +DE +A EWE QF+ KY VGRL+K
Sbjct: 130 DDHTGISADEQETANEWETQFKFKYLTVGRLVK 162
>U41552-5|AAP82646.1| 183|Caenorhabditis elegans Vema (mammalian
ventral midlineantigen) related protein 1, isoform b
protein.
Length = 183
Score = 104 bits (250), Expect = 3e-23
Identities = 61/150 (40%), Positives = 83/150 (55%)
Frame = +1
Query: 64 LTVWDELTSPLNLVLIGVIVYLIYKIIKSNFESEANVXXXXXXXXKLRKDLTVAELKKYD 243
L+ W E T + L+ V+ + Y + +S A D+TV EL+KYD
Sbjct: 3 LSSWFEFTMYDAVFLVVVLGFFFYWLTRSEQPLPAPPKELAPLPMS---DMTVEELRKYD 59
Query: 244 GTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDV 423
G + + +L +NG I+DVTRGK FYGPG Y AG DATR L T A + E+DD
Sbjct: 60 GVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQNA-VSSEWDDH 117
Query: 424 SDLGSDEIASAKEWEEQFREKYDIVGRLLK 513
+ + +DE +A EWE QF+ KY VGRL+K
Sbjct: 118 TGISADEQETANEWETQFKFKYLTVGRLVK 147
>AL024499-6|CAA19709.1| 326|Caenorhabditis elegans Hypothetical
protein H38K22.3 protein.
Length = 326
Score = 66.1 bits (154), Expect = 1e-11
Identities = 33/95 (34%), Positives = 51/95 (53%)
Frame = +1
Query: 217 TVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAA 396
T +L +DGT+ + LA+ G +++V K +YGPG Y FAG+DATR TG
Sbjct: 102 TPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDF-- 159
Query: 397 SENDEYDDVSDLGSDEIASAKEWEEQFREKYDIVG 501
E+ L DE+ S ++W + ++Y +VG
Sbjct: 160 QESGLIATTHGLSHDELLSIRDWVSFYDKEYPLVG 194
>AC025727-4|AAG23388.3| 463|Caenorhabditis elegans Hypothetical
protein Y73E7A.2 protein.
Length = 463
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 370 GLATGQVAASENDEYDDVSDLGSDE--IASAKEWEEQFREKYDIVGRLLKLG 519
G G+ A + ++ DDV ++ SDE ++ ++ EE+ E+ +I G+ K+G
Sbjct: 218 GEGKGKAAGEDEEDDDDVEEIPSDEEILSDFEDDEEEPAEELEIPGKSRKIG 269
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 388 VAASENDEYDDVSDLGSDEIASAKEWEEQFREKY 489
+A E + +D+SD+ D+ +A+E E+ RE+Y
Sbjct: 267 LADEEEENSNDISDIDDDDGITAEEQREEERERY 300
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 295 DVTRGKRFYGPGGPYSA--FAGKDATRGLATGQVAASENDEYDDVSDLG 435
D R KR Y P GPY + T AT AA + YD V+D G
Sbjct: 72 DNDREKRSYEPEGPYQSETTTPSTTTSTAATTTEAAEDESGYDFVNDNG 120
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 403 NDEYDDVSDLGSDEIASAKEWEEQFREKYDI 495
+D DDV D ASAK+W F +K ++
Sbjct: 969 DDTKDDVISFRVDNSASAKKWSAAFADKLEL 999
>Z83113-10|CAI46598.1| 556|Caenorhabditis elegans Hypothetical
protein K08H10.2b protein.
Length = 556
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 403 NDEYDDVSDLGSDEIASAKEWEEQFREK 486
+D +D + G D SAKE+ EQ +EK
Sbjct: 170 SDAFDSAKEHGEDAQESAKEYFEQAKEK 197
>Z83113-9|CAB05548.2| 497|Caenorhabditis elegans Hypothetical
protein K08H10.2a protein.
Length = 497
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 403 NDEYDDVSDLGSDEIASAKEWEEQFREK 486
+D +D + G D SAKE+ EQ +EK
Sbjct: 170 SDAFDSAKEHGEDAQESAKEYFEQAKEK 197
>Z73975-5|CAA98278.2| 556|Caenorhabditis elegans Hypothetical
protein K08H10.2b protein.
Length = 556
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 403 NDEYDDVSDLGSDEIASAKEWEEQFREK 486
+D +D + G D SAKE+ EQ +EK
Sbjct: 170 SDAFDSAKEHGEDAQESAKEYFEQAKEK 197
>Z73975-4|CAA98279.2| 497|Caenorhabditis elegans Hypothetical
protein K08H10.2a protein.
Length = 497
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 403 NDEYDDVSDLGSDEIASAKEWEEQFREK 486
+D +D + G D SAKE+ EQ +EK
Sbjct: 170 SDAFDSAKEHGEDAQESAKEYFEQAKEK 197
>AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical
protein Y47H9C.9 protein.
Length = 829
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -1
Query: 357 FTSKRRVWASRSIKSLASSNIKYNSIHSQKNSSVRLSS 244
F + ++ WA S + + S + YN +++Q +S +LS+
Sbjct: 768 FVNAKKTWALTSEQGIESLHSWYNKLNAQIRTSAKLST 805
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.134 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,220,216
Number of Sequences: 27780
Number of extensions: 175206
Number of successful extensions: 442
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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