Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11j01f
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.3  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   7.7  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = +1

Query: 271 LAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDE 444
           +A NG  +D+ +  +   P G Y      +  +G  TG++    +D   ++ ++G+ E
Sbjct: 423 VAFNGDQYDLKKNLKVCLPPGQYCDVISGNLEKGRCTGKIVTVGSDGNANI-EIGAGE 479


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 469 LPILWLKLFHLNPDR*HRRIHRFLTQQPAL 380
           L + W   +  N +R    +H+F T QP L
Sbjct: 165 LSVFWGSAWQWNEERKQYYLHQFATGQPDL 194


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 309 ASSNIKYNSIHSQKNSSVRLSS 244
           +SSN+  NS +   NSS R SS
Sbjct: 534 SSSNVNNNSGNGNTNSSARDSS 555


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 395 RQKTMNTTMLAIWVQMK*LQPKNGKSSL 478
           R+K +N   + IW     ++PK+   S+
Sbjct: 11  RKKNLNQNQMMIWALDCSIKPKDHNGSI 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.134    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,614
Number of Sequences: 438
Number of extensions: 2032
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)